Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACI514_RS29785 Genome accession   NZ_CP173611
Coordinates   6671491..6672837 (-) Length   448 a.a.
NCBI ID   WP_160059471.1    Uniprot ID   A0A7Z2KXQ3
Organism   Pseudomonas sp. M20     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6666491..6677837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI514_RS29770 (ACI514_29755) - 6666717..6669800 (+) 3084 WP_405122846.1 pilus assembly protein -
  ACI514_RS29775 (ACI514_29760) - 6669816..6670217 (+) 402 WP_405122847.1 type IV pilin protein -
  ACI514_RS29780 (ACI514_29765) thiO 6670275..6671375 (+) 1101 WP_405122848.1 glycine oxidase ThiO -
  ACI514_RS29785 (ACI514_29770) pilR 6671491..6672837 (-) 1347 WP_160059471.1 sigma-54 dependent transcriptional regulator Regulator
  ACI514_RS29790 (ACI514_29775) pilS 6672834..6674423 (-) 1590 WP_405124251.1 ATP-binding protein Regulator
  ACI514_RS29795 (ACI514_29780) - 6674413..6674655 (-) 243 WP_405122849.1 PP0621 family protein -
  ACI514_RS29800 (ACI514_29785) - 6674782..6675798 (-) 1017 WP_160059469.1 outer membrane protein assembly factor BamD -
  ACI514_RS29805 (ACI514_29790) rluD 6675950..6676912 (+) 963 WP_122592797.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACI514_RS29810 (ACI514_29795) pgeF 6676909..6677631 (+) 723 WP_160059468.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50027.37 Da        Isoelectric Point: 6.4080

>NTDB_id=1073170 ACI514_RS29785 WP_160059471.1 6671491..6672837(-) (pilR) [Pseudomonas sp. M20]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTCCARNLAEAQALLNRESFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGAALRMPAAGGSFTAIDRRLLGDSPPMRSLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRANQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
ANMLKRLAKDTGQPPARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=1073170 ACI514_RS29785 WP_160059471.1 6671491..6672837(-) (pilR) [Pseudomonas sp. M20]
TTGAATACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCAGACATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTGCTGCGCACGCAATCTGGCTGAAGCCCAAGCGCTGCTCAACCGCGAGAGCTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGACGGTACCGGGCTGGAGCTGGTGCAGCATATTCAGCAACGTTATCCACAACTGCCC
GTAGCGATGATCACCGCCTATGGCAGCCTGGAAACGGCCATCAACGCCTTGAAAGCCGGGGCTTTCGACTTCCTGACCAA
ACCGGTCGACCTCACCCGCTTGCGAGAACTGGTCGGCGCCGCCCTGCGCATGCCGGCGGCAGGAGGCAGCTTTACAGCGA
TTGATCGACGCTTGCTGGGCGACTCGCCACCGATGCGCAGTCTGCGCAAGCAAATCGACAAACTCGCCCGCAGTCAGGCG
CCGGTGTATATCAGTGGCGAGTCAGGCAGTGGCAAGGAACTGGTCGCTCGCCTGATCCATGAGCAAGGGCCGCGCGCCAA
CCAGCCGTTCGTGCCGGTCAACTGCGGAGCAATCCCTTCGGAGCTGATGGAAAGCGAATTTTTCGGTCACCGCAAAGGCA
GTTTCACTGGCGCGGTCGAAGACAAGCCGGGGTTGTTCCAGGCGGCCCACGGCGGCACGTTGTTTCTCGATGAAGTGGCG
GACTTGCCGTTGTCGATGCAAGTCAAACTGCTGCGGGCGATTCAGGAGAAAGCCGTGCGCAGTGTTGGCGGCCAGCAGGA
AAGCGTGGTCGATGTGCGGATTCTCTGCGCCACGCACAAGGATCTCGATGCCGAGGTCGCCGCCGAACGCTTTCGTCAGG
ACCTTTATTACCGCTTGAACGTGATTGAACTGCGCGTGCCGTCCCTGCGCGAGCGGCGTGATGACATTGAAGTGCTGGCG
GCCAATATGCTCAAGCGCTTGGCCAAGGACACCGGCCAACCGCCAGCACGACTGCATCCGCAGGCGCTGGAAGCATTGAA
GAACTACCGGTTTCCGGGAAATGTTCGGGAGTTGGAGAACGTTCTCGAACGGGCGCACACCTTGTGCGAAAACCGCACGA
TCGAAGCTGAAGATTTACGTCTGAGCGAAGGCAACTGCGCGGCAGATGGCGGCATTGCCGATCTGACCCAGATCGACAAT
CTTGAGGATTATCTGGAGAACGTCGAGAGGAAGCTGATCTTGCAGGCGCTGGAGGAAACGCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTATCGTTCAGGTCGATGCGCTACAGGCTGAAAAAATTAGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2KXQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.458

98.884

0.786
  pilR Acinetobacter baumannii strain A118

49.237

100

0.504

Multiple sequence alignment