Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACI514_RS29790 Genome accession   NZ_CP173611
Coordinates   6672834..6674423 (-) Length   529 a.a.
NCBI ID   WP_405124251.1    Uniprot ID   -
Organism   Pseudomonas sp. M20     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6667834..6679423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI514_RS29775 (ACI514_29760) - 6669816..6670217 (+) 402 WP_405122847.1 type IV pilin protein -
  ACI514_RS29780 (ACI514_29765) thiO 6670275..6671375 (+) 1101 WP_405122848.1 glycine oxidase ThiO -
  ACI514_RS29785 (ACI514_29770) pilR 6671491..6672837 (-) 1347 WP_160059471.1 sigma-54 dependent transcriptional regulator Regulator
  ACI514_RS29790 (ACI514_29775) pilS 6672834..6674423 (-) 1590 WP_405124251.1 ATP-binding protein Regulator
  ACI514_RS29795 (ACI514_29780) - 6674413..6674655 (-) 243 WP_405122849.1 PP0621 family protein -
  ACI514_RS29800 (ACI514_29785) - 6674782..6675798 (-) 1017 WP_160059469.1 outer membrane protein assembly factor BamD -
  ACI514_RS29805 (ACI514_29790) rluD 6675950..6676912 (+) 963 WP_122592797.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACI514_RS29810 (ACI514_29795) pgeF 6676909..6677631 (+) 723 WP_160059468.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58575.16 Da        Isoelectric Point: 6.2730

>NTDB_id=1073171 ACI514_RS29790 WP_405124251.1 6672834..6674423(-) (pilS) [Pseudomonas sp. M20]
MIAEATHADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRGGSWLYLILNILLVVFLENTRRPAQLF
SLALVDVLLLCALFFAAGGVGSALGNLLIVSVAISNTLLRRRIGLLIAAISALGIIGSSVLLSFDHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDEERRVQLANHSAQTLLAQTHLLGHLID
DYSPAMVDRLQLWMNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQASER
QQIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHDQAEVWLALFTDPDSQLAVLEVQDNGPGVPADEQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1073171 ACI514_RS29790 WP_405124251.1 6672834..6674423(-) (pilS) [Pseudomonas sp. M20]
GTGATCGCTGAGGCCACCCACGCCGACAGCAAACAGGCGCAGCGCCTGCTGCGCCTTTATCATCTCTACCGTTTAAGCGT
CGGCATCACTCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGAATTGCTGCGCG
GCGGCAGTTGGCTGTACCTGATTCTCAACATTCTGTTGGTGGTATTCCTCGAGAACACGCGACGGCCGGCGCAACTGTTC
AGCCTGGCCCTCGTCGATGTCCTGCTTTTATGCGCTTTGTTCTTTGCTGCCGGTGGCGTTGGCAGTGCGCTGGGCAATCT
GCTGATCGTCTCGGTGGCGATCAGCAACACCTTGCTACGCCGGCGCATCGGCCTGTTGATCGCCGCCATCAGCGCGCTGG
GCATCATCGGTTCGAGTGTCCTGCTGAGCTTCGATCATCCCCTGAGCGCCAATGAATACCTGCAAGCCGGCACGCTCGGC
GCCCTGTGCTTTGCCGCATCATTACTGGTGCAGGGTCTGATCCGGCGCCTGGAGGTCAGTGAAACACTGGCCGAACAACG
CGCCAGCGAAGTCGTCGGCCTCGAAGCATTGAACGCATTGATCTTGCAACGCATGCGTACCGGAATTCTGGTGCTCGATG
AAGAACGTCGAGTGCAATTGGCCAACCACAGCGCCCAGACCTTACTCGCGCAAACACATTTGCTGGGCCATCTGATCGAC
GATTACTCGCCGGCTATGGTCGACCGCCTGCAACTGTGGATGAACAATCCGACCCTGCGCCCACAAAGCCTGAAAATTCC
CGGCAATGGTCTGGAGTTGCAACCGAGCTTCATCGCGCTGGAACAAAGCCCCAACCAGCAAACCCTGGTATTTCTCGAAG
ACCTCGCGCAAATCGCCCAGCAGGCTCAGCAACTGAAGCTCGCCGCACTCGGGCGCCTGACCGCCGGCATCTCCCATGAA
ATCCGCAATCCACTTGGTGCCATCAGTCATGCCGCGCAGCTATTGGCTGAGTCCGAGGAACTCGACAGCGCCGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGCGCGCCACAACGGCTGGATCTCAAGCCGTGGCTGGAAAATTTCGTCGCCGAAAGCCGCGAACAGGCCAGCGAGCGC
CAGCAGATTCATCTGCGGATCAACTCAGGGGACTTCACCACGCTGATGGACCCCAATCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAATGGCTGGCGCCACAGCGCCCTGCTGCATGATCAAGCCGAAGTCTGGCTGGCCCTGTTCACCGATCCCG
ACAGCCAGTTGGCGGTCCTCGAAGTGCAGGACAACGGCCCCGGCGTGCCGGCTGATGAGCAGACGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTTCAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.057

100

0.592

Multiple sequence alignment