Detailed information NTG1073148

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ACI514_RS03365
• Genome accession: NZ_CP173611
• Coordinates: 749135..751369 (+)
• Length: 744 a.a.
• NCBI ID: WP_405123085.1
• Uniprot ID: -
• Organism: Pseudomonas sp. M20
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 744135..756369

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI514_RS03340 (ACI514_03340)	-	745178..745837 (+)	660	WP_405123082.1	transglutaminase family protein	-
ACI514_RS03345 (ACI514_03345)	-	745881..746504 (+)	624	WP_405123083.1	glutathione S-transferase family protein	-
ACI514_RS03350 (ACI514_03350)	-	746628..747560 (+)	933	WP_405123084.1	ABC transporter ATP-binding protein	-
ACI514_RS03355 (ACI514_03355)	-	747557..748336 (+)	780	WP_008087860.1	ABC transporter permease	-
ACI514_RS03360 (ACI514_03360)	-	748480..748998 (-)	519	WP_007908202.1	DUF2062 domain-containing protein	-
ACI514_RS03365 (ACI514_03365)	comA	749135..751369 (+)	2235	WP_405123085.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ACI514_RS03370 (ACI514_03370)	exbB	751471..752106 (+)	636	WP_007908216.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ACI514_RS03375 (ACI514_03375)	-	752103..752531 (+)	429	WP_007908223.1	biopolymer transporter ExbD	-
ACI514_RS03380 (ACI514_03380)	lpxK	752531..753541 (+)	1011	WP_160059023.1	tetraacyldisaccharide 4'-kinase	-
ACI514_RS03385 (ACI514_03385)	-	753563..753748 (+)	186	WP_003174668.1	Trm112 family protein	-
ACI514_RS03390 (ACI514_03390)	kdsB	753745..754509 (+)	765	WP_160059022.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ACI514_RS03395 (ACI514_03395)	-	754509..754973 (+)	465	WP_160059021.1	low molecular weight protein-tyrosine-phosphatase	-
ACI514_RS03400 (ACI514_03400)	murB	754970..755989 (+)	1020	WP_160059020.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81974.18 Da
• Isoelectric Point: 10.1108

>NTDB_id=1073148 ACI514_RS03365 WP_405123085.1 749135..751369(+) (comA) [Pseudomonas sp. M20]
MRTGMMALAVGLLAPVFMPALPPVWLMLLLPVAALMLLPFRSYPLAFLLLGFTWSCVSAQWALNDRLPTEVDGETRWLEG
RVTGLPQSAEGVVRFELADARSRHEKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPAGLLNPDAFDYEAWLLAQRVGATG
TIKDGQRLSEARWAWRDSIRQRLLAVDAHGRTGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYWL
VAGLARFGLWPLRWPWLPWACGLAFAAAFGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPVLLALNLPVSLSGPLANLLAVPWVSLVVLPPAL
LGTVLLPVPYVGAGLLWLAGGLIDVLFRALAMIAGHWPAWIAPSVPTWVWAIGGLGAVLLLLPRGVPMRALGWPLLLLLV
VPPRERLDEGLAEIWQLDVGQGLAILIRTRHHALLYDAGPRFGDFDLGERVVLPALRKLSVRNLDLMLLSHADADHAGGA
LAITRGLTVDQVISGDPAGLPAQLSAEACESGRQWQWDGVRFQLWQWADAGDSNQRSCVLQIEANGERLLLTGDIDTHAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKVLQPEAVLISRGQGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIHLQL
GRFKPPWTMRHQRRFWRDTPALAR

Nucleotide

• Length: 2235 bp

>NTDB_id=1073148 ACI514_RS03365 WP_405123085.1 749135..751369(+) (comA) [Pseudomonas sp. M20]
ATGCGCACAGGGATGATGGCGCTGGCAGTTGGTCTGCTGGCCCCGGTTTTTATGCCGGCATTACCGCCGGTCTGGTTGAT
GCTGTTGCTGCCGGTGGCTGCTTTGATGCTGCTGCCGTTTCGCAGCTATCCGTTGGCGTTTTTGCTGTTGGGTTTTACGT
GGTCCTGTGTCAGCGCGCAGTGGGCGTTGAATGATCGTTTGCCGACTGAAGTGGATGGCGAAACCCGCTGGCTCGAAGGA
CGGGTCACCGGCTTGCCGCAGAGCGCCGAGGGTGTGGTGCGTTTCGAGTTGGCGGATGCGCGCTCGCGTCATGAAAAGCT
GCCATCGCTGATGCGCCTCGCCTGGTACGCCGGGCCGCCGGTCAACAGTGGCGAGCGCTGGCGATTGGCAGTCAAACTCA
AGCGCCCCGCTGGTTTGCTCAATCCGGATGCGTTCGATTACGAGGCTTGGCTGCTGGCGCAACGCGTCGGTGCGACGGGC
ACGATCAAGGACGGTCAACGCCTGAGCGAAGCGCGTTGGGCCTGGCGCGACAGCATTCGTCAGCGCCTGCTTGCAGTGGA
TGCGCACGGTCGGACCGGTGCTCTGGCCGCGTTGGTGTTGGGCGATGGGTCCGGGCTCAGTCGTGAGGATTGGCAGATTT
TGCAGGACACCGGCACCGTGCACTTGTTGGTGATTTCCGGTCAGCACATCGGCTTGCTGGCGGCGGTGATGTATTGGCTG
GTCGCAGGGTTGGCGCGATTTGGCCTGTGGCCATTGCGTTGGCCGTGGCTGCCATGGGCCTGTGGGCTGGCGTTCGCGGC
AGCGTTTGGTTATGGGCTGCTTGCCGGGTTCGATGTGCCGGTGCAGCGGGCCTGCGTGATGGTCGGGCTGGTGCTGTTGT
GGCGCCTGCGCTTTCGCCATCTGGGGGCATGGTGGCCGTTGCTGCTGGCGTTCAATGGTGTGCTGTTGCTGGATCCGCTC
GCCAGTTTGCGTCCGGGTTTGTGGCTGTCGTTTGCGGCGGTGGCGGTGTTGATTTTCACCTTTGGCGGTCGTTTGGGTCC
GTGGCGCTGGTGGCAGACCTGGACGCGGGCGCAATGGTTGATTGCGATTGGTTTGTGCCCGGTTTTGCTGGCACTGAACC
TGCCGGTCAGTCTCAGCGGGCCGCTGGCCAATCTGCTCGCAGTGCCCTGGGTCAGTCTGGTGGTGTTACCGCCAGCGCTA
CTGGGGACGGTGTTGTTGCCTGTCCCTTATGTTGGCGCCGGCCTGCTGTGGCTGGCCGGCGGTTTGATCGACGTACTGTT
TCGCGCGCTGGCAATGATTGCCGGGCATTGGCCGGCGTGGATCGCACCCTCGGTACCCACTTGGGTCTGGGCCATTGGCG
GCCTCGGCGCCGTGTTGTTGCTGTTGCCGCGCGGCGTGCCGATGCGTGCACTGGGCTGGCCATTGCTATTGCTGCTGGTC
GTGCCACCCCGCGAGCGTCTGGATGAAGGGCTGGCCGAGATCTGGCAACTCGATGTCGGCCAAGGCCTGGCCATCCTGAT
CCGCACGCGTCATCACGCGCTGCTGTATGACGCGGGGCCACGCTTTGGCGATTTCGATCTCGGTGAGCGGGTGGTGCTGC
CTGCATTGCGCAAACTCAGCGTGAGAAACCTTGATCTGATGCTGCTTAGCCATGCGGACGCCGATCACGCTGGCGGTGCT
TTGGCGATCACTCGTGGTTTGACCGTCGATCAAGTGATCAGCGGCGACCCGGCGGGGCTGCCCGCGCAGTTGAGCGCCGA
GGCCTGCGAAAGCGGCCGGCAATGGCAGTGGGACGGCGTGCGTTTTCAACTCTGGCAGTGGGCGGACGCCGGCGACAGCA
ATCAGCGTTCCTGCGTGTTGCAGATCGAGGCCAATGGCGAGCGCCTGTTGCTGACCGGCGATATCGACACCCACGCCGAA
CGCGTATTACTCGACAGTCCACTGGCGGTCCCGACGCAATGGCTGCAATCGCCTCACCATGGCAGCCGCAGTTCATCGTC
AATGGCGCTGCTCAAGGTGCTGCAACCTGAAGCCGTGTTGATTTCTCGCGGACAGGGCAACTCTTTCGGCCATCCACATC
CGACCGTACTGGCGCGTTATCGCAAACAAGGCCTGCGCATTTACGACAGCGCCGAACAGGGCGCCATTCATCTGCAACTG
GGCCGCTTCAAACCGCCGTGGACGATGCGTCATCAGCGGCGTTTCTGGCGTGATACGCCTGCGCTCGCCCGTTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.204	96.371	0.599
comA	Ralstonia pseudosolanacearum GMI1000	33.135	100	0.375