Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACI514_RS03370 Genome accession   NZ_CP173611
Coordinates   751471..752106 (+) Length   211 a.a.
NCBI ID   WP_007908216.1    Uniprot ID   J2QQ31
Organism   Pseudomonas sp. M20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 746471..757106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI514_RS03350 (ACI514_03350) - 746628..747560 (+) 933 WP_405123084.1 ABC transporter ATP-binding protein -
  ACI514_RS03355 (ACI514_03355) - 747557..748336 (+) 780 WP_008087860.1 ABC transporter permease -
  ACI514_RS03360 (ACI514_03360) - 748480..748998 (-) 519 WP_007908202.1 DUF2062 domain-containing protein -
  ACI514_RS03365 (ACI514_03365) comA 749135..751369 (+) 2235 WP_405123085.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACI514_RS03370 (ACI514_03370) exbB 751471..752106 (+) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACI514_RS03375 (ACI514_03375) - 752103..752531 (+) 429 WP_007908223.1 biopolymer transporter ExbD -
  ACI514_RS03380 (ACI514_03380) lpxK 752531..753541 (+) 1011 WP_160059023.1 tetraacyldisaccharide 4'-kinase -
  ACI514_RS03385 (ACI514_03385) - 753563..753748 (+) 186 WP_003174668.1 Trm112 family protein -
  ACI514_RS03390 (ACI514_03390) kdsB 753745..754509 (+) 765 WP_160059022.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACI514_RS03395 (ACI514_03395) - 754509..754973 (+) 465 WP_160059021.1 low molecular weight protein-tyrosine-phosphatase -
  ACI514_RS03400 (ACI514_03400) murB 754970..755989 (+) 1020 WP_160059020.1 UDP-N-acetylmuramate dehydrogenase -
  ACI514_RS03405 (ACI514_03405) - 756302..756772 (+) 471 WP_034155364.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.04 Da        Isoelectric Point: 6.8771

>NTDB_id=1073149 ACI514_RS03370 WP_007908216.1 751471..752106(+) (exbB) [Pseudomonas sp. M20]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1073149 ACI514_RS03370 WP_007908216.1 751471..752106(+) (exbB) [Pseudomonas sp. M20]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCGGCCATGGCGATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGGGAAATCCTCGCTGCCGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCCGCCGCCCGGGTCATTCACGAACTCGAGCGCTACGT
TAATGCGCTGGGCACGATTGCCGCCATGTCGCCGTTGCTCGGTCTGCTGGGCACCGTGTTAGGCATGATCGACATTTTCA
GTGCCTTCACTGGCTCAGGCATGACCACCAACGCCTCGGTATTGGCCGGTGGTATTTCCAAAGCATTGATCACCACTGCG
GCAGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGGTTCCTGCAACGCCGTATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAACTGGTTGAAGTGGTGCAGGGCGATCGTGACGTCGACCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2QQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment