Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACAM22_RS01705 Genome accession   NZ_AP028929
Coordinates   368058..370037 (+) Length   659 a.a.
NCBI ID   WP_060805239.1    Uniprot ID   A0AAT9FZ38
Organism   Streptococcus sp. SN-1     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 363058..375037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM22_RS01685 (MASAN616_03310) - 363929..365503 (+) 1575 WP_101781619.1 hypothetical protein -
  ACAM22_RS01690 - 365552..365758 (+) 207 Protein_334 dTDP-glucose 4,6-dehydratase -
  ACAM22_RS01695 (MASAN616_03320) rfbD 365839..366690 (+) 852 WP_033680692.1 dTDP-4-dehydrorhamnose reductase -
  ACAM22_RS01700 (MASAN616_03330) glf 366754..367857 (+) 1104 WP_060805240.1 UDP-galactopyranose mutase -
  ACAM22_RS01705 (MASAN616_03340) amiA3 368058..370037 (+) 1980 WP_060805239.1 peptide ABC transporter substrate-binding protein Regulator
  ACAM22_RS01710 (MASAN616_03350) pbp1a 370242..372407 (-) 2166 WP_369606843.1 penicillin-binding protein PBP1A -
  ACAM22_RS01715 (MASAN616_03360) recU 372400..372999 (-) 600 WP_153193550.1 Holliday junction resolvase RecU -
  ACAM22_RS01720 (MASAN616_03370) - 373066..373593 (+) 528 WP_153193548.1 DUF1273 domain-containing protein -
  ACAM22_RS01725 (MASAN616_03380) gpsB 373663..373992 (+) 330 WP_023945225.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72907.42 Da        Isoelectric Point: 4.7039

>NTDB_id=107313 ACAM22_RS01705 WP_060805239.1 368058..370037(+) (amiA3) [Streptococcus sp. SN-1]
MKTRKVLALAGVTLLAAGVLAACSGGSATKGEQTFAFTYETDPDNLNYLTTSKAATSNITSNVIDGLLENDRYGNLVPSM
AEDWSVSKDGLTYTYKIRQDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKSQALYLVQDSIKGLDAYAKGETTDFAQVGI
KALDDQTVQYTLNKPETFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSILYNGPYLLKSLVAKSSVEFAKNPNYWDK
DNVHVDKIKLSFWDGQDTSKPAENFKDGSFTAARLYPTSASFAELEKSMKDNIVYTQQDSTTYLVGTNIDRQSYKYTSKT
SDEQKTSTKKALLNKDFRQAIAFGFDRTAYASQVNGASGASKILRNLFVPPTFVQADGKNFGDMVKEKLVTYGEEWKDVN
LADAQDGLYNPEKAKAEFAKAKSALQAEGVTFPIHLDMPVDQTATTKVQRVQSFKQSVEETLGTDNVVIDIQQLQKDEVL
NITYFAETAAGEDWDISDNVGWSPDFADPSTYLDIIKPSVGENTKTYLGFDSGTDNAAAKTVGLNDYEKLVTEAGNETTD
VVKRYDKYATAQAWLTDSALIIPTTTLTGRPILSKMVPFTMPFAFSGNKGTSDPLLYKYLELQDKAVTVDEYQKAQDKWM
KEKEESNKKAQEDLAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=107313 ACAM22_RS01705 WP_060805239.1 368058..370037(+) (amiA3) [Streptococcus sp. SN-1]
ATGAAAACAAGAAAAGTATTGGCTCTTGCGGGAGTCACTTTATTAGCAGCTGGTGTCTTAGCGGCTTGTTCTGGTGGTTC
AGCTACTAAAGGTGAGCAGACTTTTGCATTTACCTACGAGACAGACCCAGATAATCTCAACTACTTAACAACAAGTAAGG
CGGCTACTTCAAACATTACTAGTAATGTGATTGATGGATTGCTTGAAAATGACCGTTATGGGAATCTTGTTCCCTCTATG
GCAGAGGACTGGTCAGTTTCTAAAGATGGTTTGACCTACACTTATAAGATTCGTCAGGATGCCAAGTGGTACACATCTGA
AGGTGAAGAATATGCTCCTGTTAAGGCTCAGGACTTTGTGACAGGTCTTAAATATGCAACAGATAAGAAATCGCAAGCCC
TTTACTTGGTACAAGATTCAATCAAAGGTCTAGATGCCTATGCAAAAGGTGAGACCACAGACTTTGCTCAAGTCGGGATT
AAAGCCCTTGACGATCAAACAGTCCAATACACCTTGAACAAACCTGAAACTTTTTGGAATTCTAAAACAACTATGGGTGT
ACTTGCGCCAGTCAATGAAGAGTTTTTGAATTCAAAAGGGGATGATTTTGCCAAAGCTACGGATCCAAGCAGTATCTTGT
ATAATGGTCCTTATTTGTTAAAATCTCTTGTGGCTAAATCTTCCGTTGAATTTGCGAAAAATCCTAACTACTGGGATAAG
GACAATGTTCATGTTGATAAGATTAAATTGTCATTCTGGGATGGGCAAGATACCAGCAAACCAGCAGAAAACTTTAAGGA
TGGAAGCTTTACAGCGGCTCGTCTCTATCCAACAAGTGCAAGTTTCGCAGAGCTTGAGAAGAGTATGAAAGACAATATTG
TCTATACTCAACAAGACTCGACTACGTATCTAGTGGGAACAAATATTGATCGTCAGTCCTATAAATATACTTCTAAGACT
AGCGACGAACAAAAGACATCTACTAAAAAGGCTCTCTTAAACAAGGATTTCCGTCAGGCTATTGCCTTTGGTTTTGATCG
TACAGCATATGCTTCACAAGTGAACGGTGCCAGTGGTGCAAGCAAAATCTTGCGTAATCTCTTTGTGCCACCAACATTTG
TTCAAGCAGATGGGAAAAACTTTGGCGATATGGTCAAAGAAAAATTAGTAACCTATGGGGAAGAATGGAAGGATGTTAAT
CTGGCTGATGCACAAGATGGTCTCTACAATCCAGAAAAAGCCAAGGCCGAATTTGCCAAGGCTAAGTCAGCTTTACAGGC
AGAAGGCGTGACCTTCCCAATTCATTTGGATATGCCAGTTGACCAGACAGCAACTACAAAAGTTCAACGTGTTCAATCTT
TCAAACAATCGGTTGAAGAAACCTTGGGTACAGATAATGTCGTAATTGATATTCAACAACTACAAAAAGATGAAGTCTTG
AATATTACCTACTTTGCTGAAACAGCAGCTGGGGAAGATTGGGATATTTCAGATAATGTTGGTTGGTCTCCAGACTTTGC
GGATCCATCAACTTATCTCGATATTATCAAACCATCAGTTGGTGAAAACACTAAAACCTACCTTGGCTTCGATTCTGGTA
CAGATAATGCTGCAGCTAAAACTGTAGGTCTAAACGACTATGAGAAATTAGTAACTGAAGCTGGAAATGAGACAACAGAT
GTAGTAAAACGATATGATAAATATGCTACAGCCCAAGCTTGGTTGACAGATAGTGCCTTGATTATCCCAACAACAACACT
TACTGGTCGCCCAATCTTGTCTAAGATGGTACCATTTACGATGCCGTTTGCCTTCTCTGGTAACAAGGGGACAAGTGATC
CACTCCTATACAAATACTTGGAACTTCAAGATAAGGCAGTCACTGTAGATGAATACCAAAAAGCTCAAGATAAATGGATG
AAAGAAAAAGAAGAATCCAATAAAAAAGCGCAAGAAGACCTTGCAAAACATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.091

100

0.592
  amiA Streptococcus salivarius strain HSISS4

59.091

100

0.592
  amiA3 Streptococcus thermophilus LMG 18311

58.485

100

0.586

Multiple sequence alignment