Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | ACI3L8_RS08885 | Genome accession | NZ_CP173391 |
| Coordinates | 1951197..1951772 (+) | Length | 191 a.a. |
| NCBI ID | WP_005432710.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain LB3 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1946197..1956772
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI3L8_RS08870 (ACI3L8_08870) | oxyR | 1946464..1947372 (+) | 909 | WP_012126437.1 | DNA-binding transcriptional regulator OxyR | - |
| ACI3L8_RS08875 (ACI3L8_08875) | - | 1947451..1950018 (-) | 2568 | WP_404971352.1 | penicillin-binding protein 1A | - |
| ACI3L8_RS08880 (ACI3L8_08880) | pilM | 1950197..1951213 (+) | 1017 | WP_005432712.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| ACI3L8_RS08885 (ACI3L8_08885) | pilN | 1951197..1951772 (+) | 576 | WP_005432710.1 | PilN domain-containing protein | Machinery gene |
| ACI3L8_RS08890 (ACI3L8_08890) | pilO | 1951765..1952358 (+) | 594 | WP_005432718.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACI3L8_RS08895 (ACI3L8_08895) | pilP | 1952348..1952863 (+) | 516 | WP_045401529.1 | pilus assembly protein PilP | Machinery gene |
| ACI3L8_RS08900 (ACI3L8_08900) | pilQ | 1952898..1954646 (+) | 1749 | WP_045369316.1 | type IV pilus secretin PilQ | Machinery gene |
| ACI3L8_RS08905 (ACI3L8_08905) | aroK | 1954835..1955353 (+) | 519 | WP_010443904.1 | shikimate kinase AroK | - |
| ACI3L8_RS08910 (ACI3L8_08910) | aroB | 1955385..1956485 (+) | 1101 | WP_045380637.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22194.53 Da Isoelectric Point: 9.4267
>NTDB_id=1072016 ACI3L8_RS08885 WP_005432710.1 1951197..1951772(+) (pilN) [Vibrio campbellii strain LB3]
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG
Nucleotide
Download Length: 576 bp
>NTDB_id=1072016 ACI3L8_RS08885 WP_005432710.1 1951197..1951772(+) (pilN) [Vibrio campbellii strain LB3]
ATGCTGTATCACATTAACCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCAATCGCTGCTCTGGGCGTGCAATGGGGGATCGGTAAGTACTACCAATACCAACAAGATCAGCAGCAACAGC
GCTTGGATTATCTCGCTCACTATATCTCTCAACTCGATAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTTGAAGGGCTGCAAAATGGTCGCAATAAAACCACTGAGTTTATGAACCTGATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCCGCCAAGCTGCTGGATGTTGATATGCACTCCATTGTT
CATGGTAAAGCGCGCTTTGGTAAAGAGTTCCAGACGTTCAAAGTCTCCTTCATGTTTAAAGACGCCTCTATAAAGGGAGG
TAAGCAGCATGGTTAA
ATGCTGTATCACATTAACCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCAATCGCTGCTCTGGGCGTGCAATGGGGGATCGGTAAGTACTACCAATACCAACAAGATCAGCAGCAACAGC
GCTTGGATTATCTCGCTCACTATATCTCTCAACTCGATAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTTGAAGGGCTGCAAAATGGTCGCAATAAAACCACTGAGTTTATGAACCTGATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCCGCCAAGCTGCTGGATGTTGATATGCACTCCATTGTT
CATGGTAAAGCGCGCTTTGGTAAAGAGTTCCAGACGTTCAAAGTCTCCTTCATGTTTAAAGACGCCTCTATAAAGGGAGG
TAAGCAGCATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
99.476 |
100 |
0.995 |
| pilN | Vibrio cholerae strain A1552 |
60.452 |
92.67 |
0.56 |