Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACI3L8_RS08880 Genome accession   NZ_CP173391
Coordinates   1950197..1951213 (+) Length   338 a.a.
NCBI ID   WP_005432712.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1945197..1956213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L8_RS08865 (ACI3L8_08865) - 1945561..1946289 (-) 729 WP_404971351.1 redoxin family protein -
  ACI3L8_RS08870 (ACI3L8_08870) oxyR 1946464..1947372 (+) 909 WP_012126437.1 DNA-binding transcriptional regulator OxyR -
  ACI3L8_RS08875 (ACI3L8_08875) - 1947451..1950018 (-) 2568 WP_404971352.1 penicillin-binding protein 1A -
  ACI3L8_RS08880 (ACI3L8_08880) pilM 1950197..1951213 (+) 1017 WP_005432712.1 type IV pilus biogenesis protein PilM Machinery gene
  ACI3L8_RS08885 (ACI3L8_08885) pilN 1951197..1951772 (+) 576 WP_005432710.1 PilN domain-containing protein Machinery gene
  ACI3L8_RS08890 (ACI3L8_08890) pilO 1951765..1952358 (+) 594 WP_005432718.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACI3L8_RS08895 (ACI3L8_08895) pilP 1952348..1952863 (+) 516 WP_045401529.1 pilus assembly protein PilP Machinery gene
  ACI3L8_RS08900 (ACI3L8_08900) pilQ 1952898..1954646 (+) 1749 WP_045369316.1 type IV pilus secretin PilQ Machinery gene
  ACI3L8_RS08905 (ACI3L8_08905) aroK 1954835..1955353 (+) 519 WP_010443904.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37860.29 Da        Isoelectric Point: 6.3141

>NTDB_id=1072015 ACI3L8_RS08880 WP_005432712.1 1950197..1951213(+) (pilM) [Vibrio campbellii strain LB3]
MDKLLVTGIDIGHNSLKAVVLKPNGNSYALLGYKEIILKEGIVAENNTINHQEIVKTLKEMKKELPFRARKVAISVPDNA
VISKKLQIEQNLEESEKEFAVVQAFSHQSPFPVEELSLDFIKVDTDEQMRGTDSYQVFATRKDVVETRVEALQKSGLKPV
LVDVHSQSLGHMWKLVAERFPEKNKYCLLDIGSLNSSFTMFTEQGELFHKEFPCGTRTTGSLFQQDPLADDAQVATEQFN
RQIVERVKRQMQLYTSINGSQDIKGVWLSGEGAATPMLAEELSSQLALECELLNPLGLFEMKVSKRKRRAADWQHFTAAA
GLAVRGIQWLGGDNAVSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=1072015 ACI3L8_RS08880 WP_005432712.1 1950197..1951213(+) (pilM) [Vibrio campbellii strain LB3]
ATGGATAAGCTATTAGTTACGGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTGGTACTTAAACCCAATGGCAACAG
TTACGCACTACTGGGTTACAAAGAAATAATACTTAAGGAAGGTATTGTCGCTGAAAATAACACCATAAATCATCAAGAAA
TTGTAAAGACCCTTAAAGAGATGAAAAAAGAGCTACCTTTTCGTGCTCGAAAGGTCGCAATTTCAGTTCCAGATAATGCA
GTGATCAGTAAAAAGCTGCAGATAGAGCAGAACTTAGAAGAGAGTGAAAAGGAGTTTGCTGTTGTGCAAGCCTTCTCACA
TCAGTCTCCATTCCCCGTGGAAGAGCTGAGTCTTGACTTCATCAAGGTTGATACGGATGAGCAGATGCGAGGCACTGACA
GTTATCAGGTCTTCGCGACTCGTAAAGACGTGGTAGAAACCCGAGTTGAGGCATTGCAGAAATCAGGCTTGAAACCAGTA
CTGGTGGACGTGCACTCACAAAGTCTTGGTCATATGTGGAAATTGGTTGCGGAACGTTTTCCTGAAAAGAACAAGTATTG
TTTACTGGACATTGGTTCTTTGAACAGTTCTTTCACTATGTTCACTGAACAAGGTGAATTGTTTCATAAAGAATTTCCCT
GCGGTACTCGCACTACGGGCAGTTTGTTTCAACAAGATCCATTAGCAGACGATGCACAAGTGGCAACGGAGCAATTTAAT
CGACAAATCGTTGAGCGTGTTAAACGTCAGATGCAGCTCTATACCTCAATTAATGGAAGCCAGGATATCAAAGGCGTTTG
GCTTTCGGGAGAGGGCGCTGCAACACCTATGTTGGCCGAGGAGCTGTCTAGCCAGTTGGCACTAGAGTGTGAACTGCTTA
ATCCACTTGGTTTGTTTGAAATGAAGGTGTCTAAACGCAAACGTCGTGCCGCGGATTGGCAACACTTCACTGCTGCAGCC
GGACTGGCTGTACGTGGTATTCAGTGGCTAGGAGGTGACAATGCTGTATCACATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

98.225

100

0.982
  pilM Vibrio cholerae strain A1552

49.415

100

0.5

Multiple sequence alignment