Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACI3L8_RS02355 Genome accession   NZ_CP173391
Coordinates   548866..551124 (-) Length   752 a.a.
NCBI ID   WP_404971836.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 543866..556124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L8_RS02335 (ACI3L8_02335) kdsB 545152..545910 (-) 759 WP_038891570.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACI3L8_RS02340 (ACI3L8_02340) - 545910..546089 (-) 180 WP_005378451.1 Trm112 family protein -
  ACI3L8_RS02345 (ACI3L8_02345) lpxK 546070..547077 (-) 1008 WP_050918317.1 tetraacyldisaccharide 4'-kinase -
  ACI3L8_RS02350 (ACI3L8_02350) msbA 547083..548834 (-) 1752 WP_005431688.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACI3L8_RS02355 (ACI3L8_02355) comEC 548866..551124 (-) 2259 WP_404971836.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACI3L8_RS02360 (ACI3L8_02360) - 551133..551642 (+) 510 WP_005431694.1 DUF2062 domain-containing protein -
  ACI3L8_RS02365 (ACI3L8_02365) lolE 551840..553084 (-) 1245 WP_331443938.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ACI3L8_RS02370 (ACI3L8_02370) lolD 553087..553794 (-) 708 WP_404971837.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACI3L8_RS02375 (ACI3L8_02375) lolC 553787..554995 (-) 1209 WP_038891563.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ACI3L8_RS02380 (ACI3L8_02380) - 555260..555829 (+) 570 WP_404971838.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 83923.15 Da        Isoelectric Point: 9.9099

>NTDB_id=1072000 ACI3L8_RS02355 WP_404971836.1 548866..551124(-) (comEC) [Vibrio campbellii strain LB3]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTTQVTIKPILGLKNEAGFDAEKQAI
GKGIVARTVTPDDAKWLIRTHSSFRQQIITAVDTHIAELDHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLLFPKFVHLPSAVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQTKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPIAFQLSGVLWQLVDWVLLPLTWSLQFAVGSWHFVSLPLTLTILAVAICGLLRRFLNRGSLVTLV
ILVTGVALFYERTTNSWRVDVLDVGHGLAVLIEKHGKVALYDTGKAWNSGSIAQQVLSPVLHRRGFGTIDMFIISHADSD
HAGGRQYIEQHFSPAQKLSSQNYANYQSCIAGERWHWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKGSGFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQAASAHWLDTGNHGQV
SVFIERDNWYFEAKRSETFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=1072000 ACI3L8_RS02355 WP_404971836.1 548866..551124(-) (comEC) [Vibrio campbellii strain LB3]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGATA
GGTAAGGGTATTGTCGCTAGAACTGTCACACCTGATGACGCGAAATGGTTGATTCGTACACACTCTTCATTTCGACAGCA
AATCATTACGGCCGTTGATACTCATATTGCTGAACTTGACCATTTCCCTTTAATCAGTGCATTAGCGTTTAGTGACCGCT
CCCTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCAATCTCTGGTTTGCATATT
GGAATGGCGTTTGCGTTTGGCATGAGTTTGGGCTTTGTCATTCGGCTTCTATTCCCCAAATTTGTTCACCTTCCTTCCGC
TGTCGGTTTATTGGCAGCGCTCGTTTATGCGTGGTTGGCCGATTTTTCTTTACCTACAACCCGTGCTTTCTCAGTTTGTG
TCATTTATCTCGTACTTAAAGCGGCGTTGGTTCATTGGAGCCCTTGGCGAGTGTTATTGCTCGCAGTCTCGATACAGCTT
TTCATCGAGCCTTTTGCTTCATTCACGATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTAGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGTGCTTACTTTGCTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTATCCATCGCTTACAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTTCCTTTGATGTTCCTAGCGCTGATTGTTACCCCAATCGCTTTTCAGTTGTCTGGTGTGCTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGTAGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTAGCAGTTGCCATCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGCTCGTTACGTTAGTC
ATTCTAGTAACGGGTGTCGCCCTATTTTATGAGCGTACAACGAATTCTTGGCGAGTGGACGTGTTAGATGTAGGGCATGG
CCTTGCGGTATTAATTGAGAAGCATGGAAAGGTGGCGCTTTATGATACAGGCAAAGCTTGGAACTCAGGGAGCATAGCGC
AACAAGTTCTCTCTCCTGTATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCTGGAGGTAGGCAATATATAGAGCAGCACTTTTCGCCAGCGCAGAAATTAAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGCATTGGCAGGCGCTTTATTTTGAAGTCTTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTGGATAAGGGATCGGGTTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGCTTGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAATTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAATGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGCAGCAAGTGCCCACTGGTTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAGCTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

97.207

100

0.972
  comEC Vibrio parahaemolyticus RIMD 2210633

66.356

100

0.664
  comEC Vibrio cholerae strain A1552

40.824

100

0.408

Multiple sequence alignment