Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ACI3L5_RS15290 Genome accession   NZ_CP173389
Coordinates   3345053..3345697 (+) Length   214 a.a.
NCBI ID   WP_182053525.1    Uniprot ID   A0AAQ2XZ63
Organism   Vibrio campbellii strain LB10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3340053..3350697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L5_RS15275 (ACI3L5_15275) - 3340506..3341954 (-) 1449 WP_038891136.1 MSHA biogenesis protein MshI -
  ACI3L5_RS15280 (ACI3L5_15280) csrD 3341966..3343975 (-) 2010 WP_005432793.1 RNase E specificity factor CsrD -
  ACI3L5_RS15285 (ACI3L5_15285) ssb 3344223..3344759 (-) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  ACI3L5_RS15290 (ACI3L5_15290) qstR 3345053..3345697 (+) 645 WP_182053525.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACI3L5_RS15295 (ACI3L5_15295) galU 3345862..3346734 (+) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACI3L5_RS15300 (ACI3L5_15300) uvrA 3346873..3349695 (+) 2823 WP_167424612.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24581.49 Da        Isoelectric Point: 8.0591

>NTDB_id=1071982 ACI3L5_RS15290 WP_182053525.1 3345053..3345697(+) (qstR) [Vibrio campbellii strain LB10]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTTPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1071982 ACI3L5_RS15290 WP_182053525.1 3345053..3345697(+) (qstR) [Vibrio campbellii strain LB10]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAAGAGTTGGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCACTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACCTGTATCAAATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

99.533

100

0.995
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment