Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACI3L5_RS05850 Genome accession   NZ_CP173389
Coordinates   1242678..1244936 (+) Length   752 a.a.
NCBI ID   WP_404973505.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1240004..1264636 1242678..1244936 within 0


Gene organization within MGE regions


Location: 1240004..1264636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L5_RS05835 (ACI3L5_05835) lolD 1240004..1240711 (+) 708 WP_404969510.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACI3L5_RS05840 (ACI3L5_05840) lolE 1240714..1241958 (+) 1245 WP_404973504.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ACI3L5_RS05845 (ACI3L5_05845) - 1242160..1242669 (-) 510 WP_005431694.1 DUF2062 domain-containing protein -
  ACI3L5_RS05850 (ACI3L5_05850) comEC 1242678..1244936 (+) 2259 WP_404973505.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACI3L5_RS05855 (ACI3L5_05855) msbA 1244968..1246719 (+) 1752 WP_005431688.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACI3L5_RS05860 (ACI3L5_05860) lpxK 1246725..1247732 (+) 1008 WP_103410091.1 tetraacyldisaccharide 4'-kinase -
  ACI3L5_RS05865 (ACI3L5_05865) - 1247713..1247892 (+) 180 WP_005378451.1 Trm112 family protein -
  ACI3L5_RS05870 (ACI3L5_05870) kdsB 1247892..1248650 (+) 759 WP_038891570.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACI3L5_RS05875 (ACI3L5_05875) - 1248732..1250291 (-) 1560 WP_005431687.1 SpoVR family protein -
  ACI3L5_RS05880 (ACI3L5_05880) - 1250303..1251574 (-) 1272 WP_038891573.1 YeaH/YhbH family protein -
  ACI3L5_RS05885 (ACI3L5_05885) - 1251620..1253554 (-) 1935 WP_005431706.1 PrkA family serine protein kinase -
  ACI3L5_RS05890 (ACI3L5_05890) - 1254044..1254544 (-) 501 WP_005534010.1 YfbU family protein -
  ACI3L5_RS05895 (ACI3L5_05895) - 1254703..1255368 (-) 666 WP_404973506.1 energy-coupling factor ABC transporter permease -
  ACI3L5_RS05900 (ACI3L5_05900) pflA 1255560..1256300 (-) 741 WP_005431703.1 pyruvate formate lyase 1-activating protein -
  ACI3L5_RS05905 (ACI3L5_05905) - 1256445..1257422 (-) 978 WP_005431699.1 lipid A deacylase LpxR family protein -
  ACI3L5_RS05910 (ACI3L5_05910) pflB 1257575..1259851 (-) 2277 WP_045453296.1 formate C-acetyltransferase -
  ACI3L5_RS05915 (ACI3L5_05915) - 1260158..1261705 (-) 1548 WP_038892562.1 DUF3360 family protein -
  ACI3L5_RS05920 (ACI3L5_05920) - 1262164..1263627 (+) 1464 WP_404973507.1 54K polar flagellar sheath protein A -
  ACI3L5_RS05925 (ACI3L5_05925) - 1263866..1264636 (+) 771 WP_005446708.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84184.40 Da        Isoelectric Point: 9.6667

>NTDB_id=1071960 ACI3L5_RS05850 WP_404973505.1 1242678..1244936(+) (comEC) [Vibrio campbellii strain LB10]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTSQVTIKPILGLKNEAGFDAEKQAI
GKGITARAVTPDDAKWLIRTHSSFRQQIITAVDSHIAELDHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLLFPKFVHLPSAVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQTKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPIAFQLAGVLWQLVDWVLLPLTWSLQFAVGSWHFVSLPLTLTILAVAICGLLRRFLNRGSLVTLV
MLVTGVALFYERITNSWRVDVLDVGHGLAVLIEKHGKVALYDTGKAWNSGSIAQQVISPVLHRRGFGTIDMFIISHADSD
HAGGRQYIEQHFSPAQKFSSQNYANYQSCIAGERWYWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESDFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQEANAHWLDTGNHGQV
SVFIERDNWYFEVKRSETFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=1071960 ACI3L5_RS05850 WP_404973505.1 1242678..1244936(+) (comEC) [Vibrio campbellii strain LB10]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTAGTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGATA
GGTAAGGGTATTACCGCTAGAGCTGTCACACCTGATGACGCGAAATGGTTGATTCGTACACACTCTTCATTTCGACAGCA
AATCATTACGGCCGTTGATAGTCATATTGCTGAGCTTGACCATTTCCCGTTAATCAGTGCATTAGCATTTAGTGACCGCT
CCCTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCGATCTCTGGTTTGCATATT
GGAATGGCGTTTGCGTTTGGCATGAGTTTGGGCTTTGTCATTCGGCTTCTATTCCCCAAGTTTGTTCACCTTCCTTCCGC
TGTCGGTTTATTGGCAGCGCTCGTTTATGCGTGGTTGGCCGATTTTTCCTTACCTACAACCCGTGCTTTTTCGGTTTGTG
TCATTTATCTCGTACTTAAAGCGGCTTTGGTTCATTGGAGCCCTTGGCGAGTGTTACTGCTCGCTGTCTCGATACAGCTT
TTCATCGAGCCTTTTGCTTCATTCACGATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTAGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGTACTTACTTTGCTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTATCCATCGCTTATAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTCCCTTTGATGTTCCTAGCGCTGATTGTAACCCCAATTGCTTTTCAGTTGGCTGGTGTGCTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGTCGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTCGCAGTTGCCATCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGCTCGTTACTTTAGTC
ATGCTAGTGACGGGTGTCGCCCTATTTTATGAGCGTATAACAAATTCTTGGCGAGTGGACGTGTTAGATGTAGGGCATGG
CCTTGCGGTATTAATTGAGAAGCATGGAAAGGTGGCGCTTTATGACACAGGCAAAGCTTGGAACTCAGGGAGCATAGCTC
AGCAAGTTATCTCTCCCGTATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCTGGAGGTAGGCAGTATATAGAGCAGCACTTTTCGCCAGCGCAGAAATTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGTATTGGCAGGCGCTTTATTTTGAAGTCCTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTGGATAAGGAATCGGATTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGTTGGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAGTTTGTTCAAACTGTCTCTCCAACCTTAGCGATAGCCTCGTTAGCAAAAAGTAATCAGTGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGAAGCAAATGCCCACTGGCTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAGTTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-466)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-672)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

97.606

100

0.976
  comEC Vibrio parahaemolyticus RIMD 2210633

66.223

100

0.662
  comEC Vibrio cholerae strain A1552

40.957

100

0.41

Multiple sequence alignment