Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACI3L7_RS08705 Genome accession   NZ_CP173387
Coordinates   1855279..1857537 (+) Length   752 a.a.
NCBI ID   WP_404969512.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB135     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1850279..1862537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L7_RS08680 (ACI3L7_08680) - 1850569..1851138 (-) 570 WP_212581702.1 PilZ domain-containing protein -
  ACI3L7_RS08685 (ACI3L7_08685) lolC 1851403..1852611 (+) 1209 WP_051117454.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ACI3L7_RS08690 (ACI3L7_08690) lolD 1852604..1853311 (+) 708 WP_404969510.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACI3L7_RS08695 (ACI3L7_08695) lolE 1853314..1854558 (+) 1245 WP_404969511.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ACI3L7_RS08700 (ACI3L7_08700) - 1854761..1855270 (-) 510 WP_005431694.1 DUF2062 domain-containing protein -
  ACI3L7_RS08705 (ACI3L7_08705) comEC 1855279..1857537 (+) 2259 WP_404969512.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACI3L7_RS08710 (ACI3L7_08710) msbA 1857569..1859320 (+) 1752 WP_005431688.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACI3L7_RS08715 (ACI3L7_08715) lpxK 1859326..1860333 (+) 1008 WP_404969513.1 tetraacyldisaccharide 4'-kinase -
  ACI3L7_RS08720 (ACI3L7_08720) - 1860314..1860493 (+) 180 WP_005378451.1 Trm112 family protein -
  ACI3L7_RS08725 (ACI3L7_08725) kdsB 1860493..1861251 (+) 759 WP_038891570.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84258.48 Da        Isoelectric Point: 9.6667

>NTDB_id=1071932 ACI3L7_RS08705 WP_404969512.1 1855279..1857537(+) (comEC) [Vibrio campbellii strain LB135]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTTQVTIKPILGLKNEAGFDAEKQAI
GKGITARAVTPDDAKWLIRTHSSFRQQIITAVDTHIAELDHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLLFPKFVHLPSAVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAVLVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQTKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPISFQLAGMLWQLVDWVLLPLTWSLQFAAGSWHFVSLPLTLTILAVAICGLLRRFLNRGSLVTLV
ILVTGVALFYERTTNSWRVDVLDVGHGLAVLIEKHGKVALYDTGKVWNSGSIAQQVISPVLHRRGFGTIDMFIISHADSD
HAGGRQYIEQHFSPAQKFSSQNYANYQSCIAGERWYWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESDFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQEANAHWLDTGNHGQV
SVFIERDNWYFEVKRSETFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=1071932 ACI3L7_RS08705 WP_404969512.1 1855279..1857537(+) (comEC) [Vibrio campbellii strain LB135]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACCGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGATA
GGTAAGGGTATTACCGCTAGAGCTGTCACACCTGATGACGCGAAATGGTTGATTCGTACACACTCTTCATTTCGACAGCA
AATCATTACGGCCGTTGATACTCATATTGCTGAACTTGACCATTTCCCTTTAATCAGTGCATTAGCGTTTAGCGACCGCT
CCCTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCGATCTCTGGTTTGCATATT
GGAATGGCGTTTGCATTTGGCATGAGTTTGGGCTTTGTCATTCGGCTTCTATTCCCCAAGTTTGTTCACCTTCCTTCCGC
TGTCGGTTTATTGGCAGCGCTCGTTTATGCGTGGTTGGCCGATTTTTCCTTACCTACAACCCGTGCTTTTTCGGTTTGTG
TCATTTATCTCGTGCTTAAAGCGGTTTTGGTTCATTGGAGTCCTTGGCGAGTGTTACTGCTCGCTGTCTCGATACAGCTT
TTCATCGAGCCTTTTGCTTCATTCACGATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTGGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAACGAAGCTGAGTTCACTACTAAAAATACAGTTAGTACTTACTTTACTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTGTCCATTGCTTACAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTCCCTTTGATGTTCCTAGCGCTGATTGTAACCCCAATTTCTTTTCAGTTGGCTGGTATGCTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGCCGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTCGCAGTTGCCATCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGCTCGTTACGTTAGTC
ATTCTAGTAACGGGTGTCGCCCTATTTTATGAGCGTACAACGAATTCTTGGCGAGTGGACGTGTTAGATGTAGGGCATGG
CCTTGCGGTATTAATTGAGAAGCATGGAAAGGTGGCGCTTTATGACACAGGCAAAGTTTGGAACTCAGGGAGCATAGCTC
AGCAAGTTATCTCTCCCGTATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCTGGAGGTAGGCAGTATATAGAGCAGCACTTTTCGCCAGCGCAGAAATTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGTATTGGCAGGCGCTTTATTTTGAAGTCCTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTGGATAAGGAATCGGATTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGCTTGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAGTTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAGTGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGAAGCAAATGCCCACTGGCTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAGTTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-672)

Competence protein (Competence)

(208-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

97.739

100

0.977
  comEC Vibrio parahaemolyticus RIMD 2210633

66.09

100

0.661
  comEC Vibrio cholerae strain A1552

40.957

100

0.41

Multiple sequence alignment