Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACI3L9_RS13445 Genome accession   NZ_CP173385
Coordinates   2929490..2931748 (+) Length   752 a.a.
NCBI ID   WP_079401119.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB198     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2924490..2936748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L9_RS13420 (ACI3L9_13420) - 2924786..2925355 (-) 570 WP_038891579.1 PilZ domain-containing protein -
  ACI3L9_RS13425 (ACI3L9_13425) lolC 2925620..2926828 (+) 1209 WP_041853212.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ACI3L9_RS13430 (ACI3L9_13430) lolD 2926821..2927528 (+) 708 WP_079401117.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACI3L9_RS13435 (ACI3L9_13435) lolE 2927531..2928775 (+) 1245 WP_079401118.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ACI3L9_RS13440 (ACI3L9_13440) - 2928972..2929481 (-) 510 WP_005431694.1 DUF2062 domain-containing protein -
  ACI3L9_RS13445 (ACI3L9_13445) comEC 2929490..2931748 (+) 2259 WP_079401119.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACI3L9_RS13450 (ACI3L9_13450) msbA 2931780..2933531 (+) 1752 WP_005431688.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACI3L9_RS13455 (ACI3L9_13455) lpxK 2933537..2934544 (+) 1008 WP_079401120.1 tetraacyldisaccharide 4'-kinase -
  ACI3L9_RS13460 (ACI3L9_13460) - 2934525..2934704 (+) 180 WP_005378451.1 Trm112 family protein -
  ACI3L9_RS13465 (ACI3L9_13465) kdsB 2934704..2935462 (+) 759 WP_038891570.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84025.25 Da        Isoelectric Point: 9.8423

>NTDB_id=1071885 ACI3L9_RS13445 WP_079401119.1 2929490..2931748(+) (comEC) [Vibrio campbellii strain LB198]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTTQVTIKPILGLKNEAGFDAEKQAI
GKGITARAGTPDDAKWLIRTHSSFRQQIITAVDSHIAELDHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLLFPKFVHLPSAVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQMKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPIASQLAGMFWQLVDWVLLPLTWSLQFAVGSWHFVSLPLTLTILAVAICGLLRRFLNRGSLVTLV
MLVTGVALFYERTTNSWRVDVLDVGHGLAVLIEKHGKVALYDTGKAWNSGSIVQQVISPILHRRGFGTIDMFIISHADSD
HAGGRQYIEQHFSPAQKFSSQNYANYQSCIAGERWHWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESGFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQAASAHWLDTGNHGQV
SVFIERDNWYFEAKRSETFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=1071885 ACI3L9_RS13445 WP_079401119.1 2929490..2931748(+) (comEC) [Vibrio campbellii strain LB198]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACGGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGATA
GGTAAGGGTATTACCGCTAGAGCTGGCACACCTGATGACGCGAAATGGTTGATTCGTACACACTCTTCATTTCGACAGCA
AATCATTACGGCCGTTGATAGTCATATTGCTGAGCTTGACCATTTCCCGTTAATCAGTGCATTAGCATTTAGTGACCGCT
CCCTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCAATCTCTGGTTTGCATATT
GGAATGGCGTTTGCGTTTGGCATGAGTTTGGGCTTTGTCATTCGGCTTCTATTCCCCAAATTTGTTCACCTTCCTTCCGC
TGTCGGTTTATTGGCAGCGCTCGTTTATGCGTGGTTGGCCGATTTTTCTTTACCTACAACCCGTGCTTTCTCGGTTTGTG
TCATTTATCTCGTACTTAAAGCGGCGTTGGTTCATTGGAGCCCTTGGCGAGTGTTATTGCTCGCAGTCTCGATACAGCTT
TTCATCGAGCCTTTTGCTTCATTCACGATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTAGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAATGAAGCTGAGTTCACTACTAAAAATACAGTTAGTACTTACTTTGCTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTATCCATCGCTTACAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTCCCTTTGATGTTCCTAGCGTTGATTGTAACCCCAATTGCTTCTCAGTTGGCTGGTATGTTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGTCGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTCGCAGTTGCCATCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGCTCGTTACGTTAGTC
ATGCTAGTGACGGGGGTCGCCCTATTTTATGAGCGTACAACAAATTCTTGGCGAGTGGACGTGTTAGATGTAGGGCATGG
CCTTGCGGTATTAATTGAGAAGCATGGAAAGGTGGCGCTTTATGACACAGGCAAAGCTTGGAACTCAGGGAGCATAGTTC
AGCAAGTTATCTCTCCTATATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCTGGAGGTCGGCAGTATATAGAGCAGCACTTTTCGCCAGCGCAGAAGTTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGCATTGGCAGGCGCTTTATTTTGAAGTCTTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTGGATAAGGAATCGGGTTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGTTGGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAATTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAATGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGCAGCAAGTGCCCACTGGTTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAGCTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-673)

Competence protein (Competence)

(208-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

97.074

100

0.971
  comEC Vibrio parahaemolyticus RIMD 2210633

65.824

100

0.658
  comEC Vibrio cholerae strain A1552

41.09

100

0.411

Multiple sequence alignment