Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ACI3L6_RS12570 Genome accession   NZ_CP173383
Coordinates   2822950..2823582 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio campbellii strain LB314     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2817950..2828582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L6_RS12550 (ACI3L6_12550) - 2819846..2820325 (+) 480 WP_079402734.1 TIGR02444 family protein -
  ACI3L6_RS12555 (ACI3L6_12555) - 2820426..2821433 (+) 1008 WP_045370245.1 hydrolase -
  ACI3L6_RS12560 (ACI3L6_12560) - 2821504..2821716 (+) 213 WP_005432763.1 YheU family protein -
  ACI3L6_RS12565 (ACI3L6_12565) - 2821841..2822710 (+) 870 WP_005432770.1 phosphoribulokinase -
  ACI3L6_RS12570 (ACI3L6_12570) crp 2822950..2823582 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  ACI3L6_RS12575 (ACI3L6_12575) - 2823781..2824572 (-) 792 WP_079402733.1 DUF1338 domain-containing protein -
  ACI3L6_RS12580 (ACI3L6_12580) astD 2824837..2826294 (-) 1458 WP_005432762.1 succinylglutamate-semialdehyde dehydrogenase -
  ACI3L6_RS12585 (ACI3L6_12585) astA 2826323..2827342 (-) 1020 WP_012126464.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=1071831 ACI3L6_RS12570 WP_005381432.1 2822950..2823582(+) (crp) [Vibrio campbellii strain LB314]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1071831 ACI3L6_RS12570 WP_005381432.1 2822950..2823582(+) (crp) [Vibrio campbellii strain LB314]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
GAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGCGACTTCATTGGTGAGCTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCAGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGCCTTTCTGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAGCCAGATGCGATGACGCAC
CCAGACGGAATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATTGTTGGCTGTTCTCGTGAGACAGTAGGCCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAAACTATCGTTGTTTACGGAACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment