Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ACI3L6_RS12140 Genome accession   NZ_CP173383
Coordinates   2725199..2725843 (+) Length   214 a.a.
NCBI ID   WP_079402760.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB314     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2720199..2730843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L6_RS12125 (ACI3L6_12125) - 2720652..2722100 (-) 1449 WP_079402759.1 MSHA biogenesis protein MshI -
  ACI3L6_RS12130 (ACI3L6_12130) csrD 2722112..2724121 (-) 2010 WP_005432793.1 RNase E specificity factor CsrD -
  ACI3L6_RS12135 (ACI3L6_12135) ssb 2724369..2724905 (-) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  ACI3L6_RS12140 (ACI3L6_12140) qstR 2725199..2725843 (+) 645 WP_079402760.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACI3L6_RS12145 (ACI3L6_12145) galU 2726008..2726880 (+) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACI3L6_RS12150 (ACI3L6_12150) uvrA 2727019..2729841 (+) 2823 WP_079402761.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24547.47 Da        Isoelectric Point: 8.0591

>NTDB_id=1071825 ACI3L6_RS12140 WP_079402760.1 2725199..2725843(+) (qstR) [Vibrio campbellii strain LB314]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISPQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1071825 ACI3L6_RS12140 WP_079402760.1 2725199..2725843(+) (qstR) [Vibrio campbellii strain LB314]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGCCCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAAGAGTTGGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

99.533

100

0.995
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.804

100

0.528

Multiple sequence alignment