Detailed information NTG1071816

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACI3L6_RS11095
• Genome accession: NZ_CP173383
• Coordinates: 2531027..2531896 (+)
• Length: 289 a.a.
• NCBI ID: WP_012128879.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain LB314
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2526027..2536896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3L6_RS11075 (ACI3L6_11075)	nadC	2526418..2527305 (+)	888	WP_012128875.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACI3L6_RS11080 (ACI3L6_11080)	-	2527571..2528011 (+)	441	WP_061065377.1	pilin	-
ACI3L6_RS11085 (ACI3L6_11085)	pilB	2528011..2529696 (+)	1686	WP_079400988.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACI3L6_RS11090 (ACI3L6_11090)	pilC	2529731..2530954 (+)	1224	WP_079400987.1	type II secretion system F family protein	Machinery gene
ACI3L6_RS11095 (ACI3L6_11095)	pilD	2531027..2531896 (+)	870	WP_012128879.1	A24 family peptidase	Machinery gene
ACI3L6_RS11100 (ACI3L6_11100)	coaE	2531897..2532511 (+)	615	WP_079400986.1	dephospho-CoA kinase	-
ACI3L6_RS11105 (ACI3L6_11105)	zapD	2532539..2533279 (+)	741	WP_012128881.1	cell division protein ZapD	-
ACI3L6_RS11110 (ACI3L6_11110)	yacG	2533342..2533536 (+)	195	WP_005534053.1	DNA gyrase inhibitor YacG	-
ACI3L6_RS11115 (ACI3L6_11115)	rplS	2533926..2534279 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
ACI3L6_RS11120 (ACI3L6_11120)	trmD	2534321..2535064 (-)	744	WP_005534054.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACI3L6_RS11125 (ACI3L6_11125)	rimM	2535092..2535640 (-)	549	WP_005534055.1	ribosome maturation factor RimM	-
ACI3L6_RS11130 (ACI3L6_11130)	rpsP	2535668..2535916 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32503.75 Da
• Isoelectric Point: 7.5422

>NTDB_id=1071816 ACI3L6_RS11095 WP_012128879.1 2531027..2531896(+) (pilD) [Vibrio campbellii strain LB314]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCQAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=1071816 ACI3L6_RS11095 WP_012128879.1 2531027..2531896(+) (pilD) [Vibrio campbellii strain LB314]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTAGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGCGTACCGCGCTCATCTTGTCAGCAATGCGGAACTCCCATTCGCATCCGA
GACAACATTCCGGTAATTAGCTGGCTATTACTGAAAGGCAAGTGCCACAACTGCCAAGCGCCCATCAGTGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
AGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCTGCATTGGGTGCTTGGCTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	98.616	100	0.986
pilD	Vibrio cholerae strain A1552	75.694	99.654	0.754
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	46.014	95.502	0.439