Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACI3L6_RS02950 Genome accession   NZ_CP173383
Coordinates   648981..651239 (+) Length   752 a.a.
NCBI ID   WP_079401119.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB314     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 643981..656239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L6_RS02925 (ACI3L6_02925) - 644277..644846 (-) 570 WP_038891579.1 PilZ domain-containing protein -
  ACI3L6_RS02930 (ACI3L6_02930) lolC 645111..646319 (+) 1209 WP_041853212.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ACI3L6_RS02935 (ACI3L6_02935) lolD 646312..647019 (+) 708 WP_079401117.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACI3L6_RS02940 (ACI3L6_02940) lolE 647022..648266 (+) 1245 WP_079401118.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ACI3L6_RS02945 (ACI3L6_02945) - 648463..648972 (-) 510 WP_005431694.1 DUF2062 domain-containing protein -
  ACI3L6_RS02950 (ACI3L6_02950) comEC 648981..651239 (+) 2259 WP_079401119.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACI3L6_RS02955 (ACI3L6_02955) msbA 651271..653022 (+) 1752 WP_005431688.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACI3L6_RS02960 (ACI3L6_02960) lpxK 653028..654035 (+) 1008 WP_079401120.1 tetraacyldisaccharide 4'-kinase -
  ACI3L6_RS02965 (ACI3L6_02965) - 654016..654195 (+) 180 WP_005378451.1 Trm112 family protein -
  ACI3L6_RS02970 (ACI3L6_02970) kdsB 654195..654953 (+) 759 WP_038891570.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84025.25 Da        Isoelectric Point: 9.8423

>NTDB_id=1071804 ACI3L6_RS02950 WP_079401119.1 648981..651239(+) (comEC) [Vibrio campbellii strain LB314]
MTLLEKSLTLALFVASVISSAWWPTMPDWRWLLLGIIATGSIIKLRRGLLSIGVIWGFMVVIIHGNVMEHQRQALFRAGV
NITINGKVDSPFTQISHGYEGIAQINQVNSQNLLPFLKPKIRLITAFPLPVNSEFTTQVTIKPILGLKNEAGFDAEKQAI
GKGITARAGTPDDAKWLIRTHSSFRQQIITAVDSHIAELDHFPLISALAFSDRSLLAKQDWQSLRDSGLLHLVSISGLHI
GMAFAFGMSLGFVIRLLFPKFVHLPSAVGLLAALVYAWLADFSLPTTRAFSVCVIYLVLKAALVHWSPWRVLLLAVSIQL
FIEPFASFTMSFWLSYLSVVAVLLAVNVVQQRRGNWQMKLSSLLKIQLVLTLLIVPISGAFFSGTSLVSIAYNLVFIPWF
GFLVVPLMFLALIVTPIASQLAGMFWQLVDWVLLPLTWSLQFAVGSWHFVSLPLTLTILAVAICGLLRRFLNRGSLVTLV
MLVTGVALFYERTTNSWRVDVLDVGHGLAVLIEKHGKVALYDTGKAWNSGSIVQQVISPILHRRGFGTIDMFIISHADSD
HAGGRQYIEQHFSPAQKFSSQNYANYQSCIAGERWHWQALYFEVLWPPKQVNRAYNPHSCVVRVVDKESGFKLLLTGDIE
AVSEWILMREPNKLESDVMLVPHHGSKSSSNPKFVQTVSPTLAIASLAKSNQWGMPAENVLSAYQAASAHWLDTGNHGQV
SVFIERDNWYFEAKRSETFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=1071804 ACI3L6_RS02950 WP_079401119.1 648981..651239(+) (comEC) [Vibrio campbellii strain LB314]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCGTTATTTGTAGCGAGCGTTATATCGTCTGCGTGGTGGCCGACGATGCC
TGATTGGCGATGGTTGCTGCTGGGAATAATTGCCACTGGCTCGATTATCAAATTACGTCGTGGCTTATTGAGCATAGGCG
TAATTTGGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCGAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCAGATCAATCA
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGATTGATAACGGCTTTCCCACTGCCCGTTAACAGTG
AGTTCACTACTCAGGTGACGATCAAACCGATTCTGGGTTTGAAGAATGAGGCGGGGTTTGATGCGGAAAAGCAAGCGATA
GGTAAGGGTATTACCGCTAGAGCTGGCACACCTGATGACGCGAAATGGTTGATTCGTACACACTCTTCATTTCGACAGCA
AATCATTACGGCCGTTGATAGTCATATTGCTGAGCTTGACCATTTCCCGTTAATCAGTGCATTAGCATTTAGTGACCGCT
CCCTGCTTGCTAAACAGGATTGGCAGTCTCTGCGAGATAGCGGGCTGCTGCATTTGGTCTCAATCTCTGGTTTGCATATT
GGAATGGCGTTTGCGTTTGGCATGAGTTTGGGCTTTGTCATTCGGCTTCTATTCCCCAAATTTGTTCACCTTCCTTCCGC
TGTCGGTTTATTGGCAGCGCTCGTTTATGCGTGGTTGGCCGATTTTTCTTTACCTACAACCCGTGCTTTCTCGGTTTGTG
TCATTTATCTCGTACTTAAAGCGGCGTTGGTTCATTGGAGCCCTTGGCGAGTGTTATTGCTCGCAGTCTCGATACAGCTT
TTCATCGAGCCTTTTGCTTCATTCACGATGAGCTTCTGGTTGTCTTATCTGTCCGTGGTTGCCGTGCTTTTAGCCGTGAA
TGTGGTTCAACAGCGACGCGGCAATTGGCAAATGAAGCTGAGTTCACTACTAAAAATACAGTTAGTACTTACTTTGCTTA
TCGTGCCAATCAGCGGTGCGTTTTTCTCTGGAACAAGTTTGGTATCCATCGCTTACAACCTAGTTTTCATTCCTTGGTTT
GGTTTTTTGGTCGTCCCTTTGATGTTCCTAGCGTTGATTGTAACCCCAATTGCTTCTCAGTTGGCTGGTATGTTTTGGCA
ACTGGTGGATTGGGTGTTGTTGCCACTGACATGGTCATTACAGTTTGCGGTCGGGAGTTGGCATTTTGTAAGTTTGCCTT
TGACCTTAACGATACTCGCAGTTGCCATCTGTGGATTATTGAGACGTTTTTTGAATCGGGGCTCGCTCGTTACGTTAGTC
ATGCTAGTGACGGGGGTCGCCCTATTTTATGAGCGTACAACAAATTCTTGGCGAGTGGACGTGTTAGATGTAGGGCATGG
CCTTGCGGTATTAATTGAGAAGCATGGAAAGGTGGCGCTTTATGACACAGGCAAAGCTTGGAACTCAGGGAGCATAGTTC
AGCAAGTTATCTCTCCTATATTACATCGCAGAGGTTTTGGCACCATTGATATGTTCATTATCAGTCATGCTGATTCGGAT
CATGCTGGAGGTCGGCAGTATATAGAGCAGCACTTTTCGCCAGCGCAGAAGTTCAGCAGTCAAAACTACGCTAACTACCA
ATCTTGTATTGCGGGTGAACGCTGGCATTGGCAGGCGCTTTATTTTGAAGTCTTATGGCCACCTAAGCAGGTAAACCGTG
CTTATAATCCTCATTCGTGTGTTGTTCGAGTTGTGGATAAGGAATCGGGTTTTAAATTGCTTTTGACTGGCGATATTGAA
GCCGTCAGTGAGTGGATACTTATGCGTGAACCCAACAAGCTAGAGAGTGATGTTATGTTGGTTCCTCATCATGGTAGCAA
GAGCTCTTCGAATCCAAAATTTGTTCAAACTGTCTCTCCAACCTTGGCGATAGCCTCGTTAGCAAAAAGTAATCAATGGG
GCATGCCTGCTGAAAATGTTTTATCGGCTTATCAGGCAGCAAGTGCCCACTGGTTGGATACGGGAAATCATGGGCAGGTA
TCGGTGTTTATTGAGCGAGACAATTGGTACTTTGAAGCTAAACGTAGTGAGACATTTGAGCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-673)

Competence protein (Competence)

(208-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

97.074

100

0.971
  comEC Vibrio parahaemolyticus RIMD 2210633

65.824

100

0.658
  comEC Vibrio cholerae strain A1552

41.09

100

0.411

Multiple sequence alignment