Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   ABXH30_RS18485 Genome accession   NZ_CP173259
Coordinates   3666981..3668144 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain XW38     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3661981..3673144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH30_RS18455 (ABXH30_18455) - 3662246..3662665 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ABXH30_RS18460 (ABXH30_18460) comFC 3662739..3663428 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  ABXH30_RS18465 (ABXH30_18465) - 3663434..3663718 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ABXH30_RS18470 (ABXH30_18470) comFA 3663776..3665161 (-) 1386 WP_201489091.1 DEAD/DEAH box helicase Machinery gene
  ABXH30_RS18475 (ABXH30_18475) - 3665269..3666117 (-) 849 WP_015418336.1 DegV family protein -
  ABXH30_RS18480 (ABXH30_18480) degU 3666215..3666904 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABXH30_RS18485 (ABXH30_18485) degS 3666981..3668144 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ABXH30_RS18490 (ABXH30_18490) - 3668367..3669014 (+) 648 WP_007407485.1 YigZ family protein -
  ABXH30_RS18495 (ABXH30_18495) - 3669019..3670233 (+) 1215 WP_015418337.1 LCP family protein -
  ABXH30_RS18500 (ABXH30_18500) - 3670323..3671399 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  ABXH30_RS18505 (ABXH30_18505) tuaH 3671532..3672728 (-) 1197 WP_003151381.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=1071203 ABXH30_RS18485 WP_007407484.1 3666981..3668144(-) (degS) [Bacillus velezensis strain XW38]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=1071203 ABXH30_RS18485 WP_007407484.1 3666981..3668144(-) (degS) [Bacillus velezensis strain XW38]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951

Multiple sequence alignment