Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABXH30_RS18470 Genome accession   NZ_CP173259
Coordinates   3663776..3665161 (-) Length   461 a.a.
NCBI ID   WP_201489091.1    Uniprot ID   -
Organism   Bacillus velezensis strain XW38     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3658776..3670161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH30_RS18435 (ABXH30_18435) flgL 3658951..3659868 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ABXH30_RS18440 (ABXH30_18440) flgK 3659880..3661397 (-) 1518 WP_201489090.1 flagellar hook-associated protein FlgK -
  ABXH30_RS18445 (ABXH30_18445) - 3661413..3661895 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ABXH30_RS18450 (ABXH30_18450) flgM 3661910..3662176 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABXH30_RS18455 (ABXH30_18455) - 3662246..3662665 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ABXH30_RS18460 (ABXH30_18460) comFC 3662739..3663428 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  ABXH30_RS18465 (ABXH30_18465) - 3663434..3663718 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ABXH30_RS18470 (ABXH30_18470) comFA 3663776..3665161 (-) 1386 WP_201489091.1 DEAD/DEAH box helicase Machinery gene
  ABXH30_RS18475 (ABXH30_18475) - 3665269..3666117 (-) 849 WP_015418336.1 DegV family protein -
  ABXH30_RS18480 (ABXH30_18480) degU 3666215..3666904 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABXH30_RS18485 (ABXH30_18485) degS 3666981..3668144 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ABXH30_RS18490 (ABXH30_18490) - 3668367..3669014 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52520.89 Da        Isoelectric Point: 10.1458

>NTDB_id=1071201 ABXH30_RS18470 WP_201489091.1 3663776..3665161(-) (comFA) [Bacillus velezensis strain XW38]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1071201 ABXH30_RS18470 WP_201489091.1 3663776..3665161(-) (comFA) [Bacillus velezensis strain XW38]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCTTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGAATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629

Multiple sequence alignment