Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABXH30_RS18460 Genome accession   NZ_CP173259
Coordinates   3662739..3663428 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain XW38     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3657739..3668428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH30_RS18425 (ABXH30_18425) fliW 3657831..3658262 (-) 432 WP_057080257.1 flagellar assembly protein FliW -
  ABXH30_RS18430 (ABXH30_18430) - 3658291..3658860 (-) 570 WP_201489089.1 DUF6470 family protein -
  ABXH30_RS18435 (ABXH30_18435) flgL 3658951..3659868 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ABXH30_RS18440 (ABXH30_18440) flgK 3659880..3661397 (-) 1518 WP_201489090.1 flagellar hook-associated protein FlgK -
  ABXH30_RS18445 (ABXH30_18445) - 3661413..3661895 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ABXH30_RS18450 (ABXH30_18450) flgM 3661910..3662176 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABXH30_RS18455 (ABXH30_18455) - 3662246..3662665 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ABXH30_RS18460 (ABXH30_18460) comFC 3662739..3663428 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  ABXH30_RS18465 (ABXH30_18465) - 3663434..3663718 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ABXH30_RS18470 (ABXH30_18470) comFA 3663776..3665161 (-) 1386 WP_201489091.1 DEAD/DEAH box helicase Machinery gene
  ABXH30_RS18475 (ABXH30_18475) - 3665269..3666117 (-) 849 WP_015418336.1 DegV family protein -
  ABXH30_RS18480 (ABXH30_18480) degU 3666215..3666904 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABXH30_RS18485 (ABXH30_18485) degS 3666981..3668144 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=1071200 ABXH30_RS18460 WP_196616643.1 3662739..3663428(-) (comFC) [Bacillus velezensis strain XW38]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1071200 ABXH30_RS18460 WP_196616643.1 3662739..3663428(-) (comFC) [Bacillus velezensis strain XW38]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment