Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABXH30_RS16525 Genome accession   NZ_CP173259
Coordinates   3280594..3281238 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain XW38     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3275594..3286238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH30_RS16490 (ABXH30_16490) - 3276779..3277210 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  ABXH30_RS16495 (ABXH30_16495) - 3277210..3277551 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  ABXH30_RS16500 (ABXH30_16500) - 3277544..3279025 (+) 1482 WP_043867375.1 Na+/H+ antiporter subunit D -
  ABXH30_RS16505 (ABXH30_16505) - 3279031..3279507 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  ABXH30_RS16510 (ABXH30_16510) - 3279507..3279791 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  ABXH30_RS16515 (ABXH30_16515) mnhG 3279775..3280149 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  ABXH30_RS16520 (ABXH30_16520) - 3280189..3280572 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  ABXH30_RS16525 (ABXH30_16525) comA 3280594..3281238 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  ABXH30_RS16530 (ABXH30_16530) comP 3281319..3283625 (-) 2307 WP_044052948.1 sensor histidine kinase Regulator
  ABXH30_RS16535 (ABXH30_16535) comX 3283644..3283820 (-) 177 WP_044052947.1 competence pheromone ComX -
  ABXH30_RS16540 (ABXH30_16540) - 3283835..3284710 (-) 876 WP_026092320.1 polyprenyl synthetase family protein -
  ABXH30_RS16545 (ABXH30_16545) degQ 3284862..3285002 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ABXH30_RS16550 (ABXH30_16550) - 3285468..3285809 (+) 342 WP_003152040.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1071195 ABXH30_RS16525 WP_003152052.1 3280594..3281238(-) (comA) [Bacillus velezensis strain XW38]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1071195 ABXH30_RS16525 WP_003152052.1 3280594..3281238(-) (comA) [Bacillus velezensis strain XW38]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment