Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ABXH30_RS13270 Genome accession   NZ_CP173259
Coordinates   2683583..2683918 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain XW38     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2678583..2688918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXH30_RS13250 (ABXH30_13250) gcvT 2679194..2680294 (-) 1101 WP_058906182.1 glycine cleavage system aminomethyltransferase GcvT -
  ABXH30_RS13255 (ABXH30_13255) - 2680717..2682387 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  ABXH30_RS13260 (ABXH30_13260) - 2682405..2683199 (+) 795 WP_201489007.1 YqhG family protein -
  ABXH30_RS13265 (ABXH30_13265) sinI 2683376..2683549 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ABXH30_RS13270 (ABXH30_13270) sinR 2683583..2683918 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ABXH30_RS13275 (ABXH30_13275) tasA 2683966..2684751 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  ABXH30_RS13280 (ABXH30_13280) sipW 2684815..2685399 (-) 585 WP_012117977.1 signal peptidase I SipW -
  ABXH30_RS13285 (ABXH30_13285) tapA 2685371..2686042 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  ABXH30_RS13290 (ABXH30_13290) - 2686301..2686630 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  ABXH30_RS13295 (ABXH30_13295) - 2686670..2686849 (-) 180 WP_003153093.1 YqzE family protein -
  ABXH30_RS13300 (ABXH30_13300) comGG 2686906..2687283 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABXH30_RS13305 (ABXH30_13305) comGF 2687284..2687784 (-) 501 WP_236583338.1 competence type IV pilus minor pilin ComGF -
  ABXH30_RS13310 (ABXH30_13310) comGE 2687693..2688007 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABXH30_RS13315 (ABXH30_13315) comGD 2687991..2688428 (-) 438 WP_043867285.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABXH30_RS13320 (ABXH30_13320) comGC 2688418..2688726 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1071176 ABXH30_RS13270 WP_003153104.1 2683583..2683918(+) (sinR) [Bacillus velezensis strain XW38]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1071176 ABXH30_RS13270 WP_003153104.1 2683583..2683918(+) (sinR) [Bacillus velezensis strain XW38]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment