Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACIRXL_RS09205 Genome accession   NZ_CP173236
Coordinates   1822942..1824156 (+) Length   404 a.a.
NCBI ID   WP_410680599.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1817942..1829156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXL_RS09180 (ACIRXL_09180) manA 1818047..1819255 (-) 1209 WP_410680604.1 mannose-6-phosphate isomerase, class I -
  ACIRXL_RS09185 (ACIRXL_09185) - 1819258..1819812 (-) 555 WP_410680603.1 YobD family protein -
  ACIRXL_RS09190 (ACIRXL_09190) - 1819907..1820743 (-) 837 WP_017807081.1 PTS mannose transporter subunit IID -
  ACIRXL_RS09195 (ACIRXL_09195) - 1820757..1821560 (-) 804 WP_410680601.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  ACIRXL_RS09200 (ACIRXL_09200) manX 1821573..1822556 (-) 984 WP_410680600.1 PTS mannose transporter subunit IIAB -
  ACIRXL_RS09205 (ACIRXL_09205) pilC 1822942..1824156 (+) 1215 WP_410680599.1 type II secretion system F family protein Machinery gene
  ACIRXL_RS09210 (ACIRXL_09210) - 1824153..1824848 (+) 696 WP_410680597.1 prepilin peptidase -
  ACIRXL_RS09215 (ACIRXL_09215) coaE 1824991..1825491 (+) 501 Protein_1769 dephospho-CoA kinase -
  ACIRXL_RS09220 (ACIRXL_09220) yacG 1825612..1825815 (+) 204 WP_046097598.1 DNA gyrase inhibitor YacG -
  ACIRXL_RS09225 (ACIRXL_09225) - 1825826..1826092 (+) 267 WP_410681037.1 GNAT family N-acetyltransferase -
  ACIRXL_RS09230 (ACIRXL_09230) - 1826570..1827931 (+) 1362 WP_410680595.1 alanine/glycine:cation symporter family protein -
  ACIRXL_RS09235 (ACIRXL_09235) - 1828083..1828418 (-) 336 WP_017807091.1 carboxymuconolactone decarboxylase family protein -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 46442.22 Da        Isoelectric Point: 9.9694

>NTDB_id=1071112 ACIRXL_RS09205 WP_410680599.1 1822942..1824156(+) (pilC) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
MKLFKWKAVNQLQQKQQGMIVAKNEDIAKTLLFNRKLQNIKLQRNWQFSRKPKLNELYEFINQLALLLKASLPLKQSLLL
LQRDCTIIQLNIWISEIISALDSGLSFSQSIEKQGKYFSQQELQLLKVGEMTASLPQVCHNIAQYRQRSLKLKRKVQKIL
LYPIVVFCISSILTILLLVFVVPQFAEMYEANHSQLPSFTIFLIALSELLQTYLLHSILLVVLCVIFIRIRLKHSQRLVR
LKNQCIFYSPIFGKITKLSRLINFSGTLSLMLYAKVPLNIALQSFLPKQASWQIQKSYVGDQFLNQAIETALYWLNLGYS
LSDSVSSDFFPLEAQQMLKIGEESGQVAQMLQHISEKYQQDLDHQVDLLSQLLEPMLMLIIGGLIGAVLLGMYLPIFNMG
AMIQ

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=1071112 ACIRXL_RS09205 WP_410680599.1 1822942..1824156(+) (pilC) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
ATGAAATTATTTAAATGGAAAGCAGTTAATCAATTGCAACAAAAACAGCAAGGAATGATTGTCGCCAAAAATGAAGATAT
AGCTAAAACGCTCTTATTTAATCGAAAACTACAAAATATTAAGCTACAACGCAACTGGCAATTTTCGCGTAAACCAAAAT
TAAATGAGCTTTATGAATTCATAAATCAATTGGCTCTATTATTGAAAGCGTCTCTTCCGCTTAAACAAAGTTTATTGTTG
TTACAGCGAGATTGTACAATTATTCAATTAAATATCTGGATTAGTGAAATTATTTCTGCATTAGATAGTGGATTAAGCTT
TTCTCAGTCAATAGAAAAACAAGGTAAATATTTTTCTCAACAAGAGTTGCAACTTTTAAAAGTTGGCGAAATGACGGCAT
CACTTCCTCAAGTTTGCCACAATATTGCACAATACCGACAACGCTCATTAAAGTTGAAAAGAAAAGTCCAGAAAATCTTA
CTTTACCCTATAGTTGTGTTTTGTATTTCTTCAATTTTAACCATTCTTTTATTAGTTTTTGTTGTGCCACAATTTGCTGA
GATGTACGAGGCTAATCATAGCCAGTTGCCTTCTTTTACTATCTTTTTAATTGCATTATCAGAGTTACTACAAACTTATT
TGCTACACAGTATTTTATTGGTCGTTTTATGTGTTATTTTTATTCGTATACGTTTGAAACATTCTCAGCGTCTTGTGCGA
TTAAAGAACCAGTGTATTTTTTATTCTCCTATATTCGGAAAAATAACAAAACTCTCTCGTCTCATTAATTTTAGCGGGAC
CTTATCTTTAATGTTGTATGCTAAAGTGCCATTAAATATTGCTTTACAGTCTTTTTTACCTAAACAAGCTAGCTGGCAGA
TCCAAAAAAGTTATGTGGGCGATCAATTTTTGAACCAAGCCATAGAAACAGCATTGTATTGGCTTAATTTAGGATATAGC
TTATCTGATAGCGTTTCTAGCGATTTTTTTCCACTTGAAGCTCAGCAAATGTTAAAAATTGGTGAGGAAAGTGGTCAAGT
GGCTCAAATGTTGCAGCATATTTCGGAGAAATATCAACAAGATCTTGATCACCAAGTGGATCTGTTATCCCAATTATTAG
AGCCGATGTTGATGCTAATTATTGGCGGATTGATTGGTGCGGTACTGCTCGGAATGTACCTCCCTATTTTTAATATGGGA
GCAATGATCCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(264-395)

Type II secretion system (T2SS), protein F (T2SSF)

(60-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

52.605

99.752

0.525
  pilC Haemophilus influenzae 86-028NP

51.861

99.752

0.517
  pilC Glaesserella parasuis strain SC1401

41.397

99.257

0.411

Multiple sequence alignment