Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACIO05_RS10000 Genome accession   NZ_CP173232
Coordinates   2117635..2118849 (-) Length   404 a.a.
NCBI ID   WP_130231381.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2112635..2123849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO05_RS09970 (ACIO05_09970) - 2113366..2113701 (+) 336 WP_017807091.1 carboxymuconolactone decarboxylase family protein -
  ACIO05_RS09975 (ACIO05_09975) - 2113857..2115218 (-) 1362 WP_264256717.1 alanine/glycine:cation symporter family protein -
  ACIO05_RS09980 (ACIO05_09980) - 2115696..2115962 (-) 267 WP_264256716.1 GNAT family N-acetyltransferase -
  ACIO05_RS09985 (ACIO05_09985) yacG 2115973..2116176 (-) 204 WP_264256715.1 DNA gyrase inhibitor YacG -
  ACIO05_RS09990 (ACIO05_09990) coaE 2116173..2116799 (-) 627 WP_264256714.1 dephospho-CoA kinase -
  ACIO05_RS09995 (ACIO05_09995) - 2116943..2117638 (-) 696 WP_264256713.1 prepilin peptidase -
  ACIO05_RS10000 (ACIO05_10000) pilC 2117635..2118849 (-) 1215 WP_130231381.1 type II secretion system F family protein Machinery gene
  ACIO05_RS10005 (ACIO05_10005) manX 2119235..2120218 (+) 984 WP_264256712.1 PTS mannose transporter subunit IIAB -
  ACIO05_RS10010 (ACIO05_10010) - 2120231..2121034 (+) 804 WP_264256711.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  ACIO05_RS10015 (ACIO05_10015) - 2121048..2121884 (+) 837 WP_017807081.1 PTS mannose transporter subunit IID -
  ACIO05_RS10020 (ACIO05_10020) - 2121979..2122533 (+) 555 WP_115249260.1 YobD family protein -
  ACIO05_RS10025 (ACIO05_10025) manA 2122536..2123744 (+) 1209 WP_264256710.1 mannose-6-phosphate isomerase, class I -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 46394.18 Da        Isoelectric Point: 9.9694

>NTDB_id=1071024 ACIO05_RS10000 WP_130231381.1 2117635..2118849(-) (pilC) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3]
MKLFKWKAVNQLQQKQQGMIVAKNEDIAKTLLFNRKLQNIKLQRNWQFSRKPKLNELYEFINQLALLLKASLPLKQSLLL
LQRDCTIIQLNIWISEIISALDSGLSFSQSIEKQGKYFSQQELQLLKVGEMTASLPQVCHNIAQYRQRSLKLKRKVQKIL
LYPIVVFCISSILTILLLVFVVPQFAEMYEANHSQLPSFTVFLLALSELLQTYLLHSILLVVLCVIFIRIRLKHSQRLVR
LKNQCIFYSPILGKITKLSRLINFSGTLSLMLYAKVPLNIALQSFLPKQASWQIQKSYVGDQFLNQAIETALYWLNLGYS
LSDSVSSDFFPLEAQQMLKIGEESGQVAQMLQHISEKYQQDLDHQVDLLSQLLEPMLMLIIGGLIGAVLLGMYLPIFNMG
AMIQ

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=1071024 ACIO05_RS10000 WP_130231381.1 2117635..2118849(-) (pilC) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3]
ATGAAATTATTTAAATGGAAAGCAGTTAATCAATTGCAACAAAAACAGCAAGGAATGATTGTCGCCAAAAATGAAGATAT
AGCTAAAACGCTCTTATTTAATCGAAAACTACAAAATATTAAGCTACAACGCAACTGGCAATTTTCGCGTAAACCAAAAT
TAAATGAGCTTTATGAATTCATAAATCAATTGGCTCTATTATTGAAAGCGTCTCTTCCGCTTAAACAAAGTTTATTGTTG
TTACAGCGAGATTGTACAATTATTCAGTTAAATATCTGGATTAGTGAAATTATTTCTGCATTAGATAGTGGATTAAGCTT
TTCTCAGTCAATAGAAAAACAAGGTAAATATTTTTCTCAACAGGAGTTGCAACTTTTAAAAGTTGGCGAAATGACGGCAT
CACTTCCTCAAGTTTGCCACAATATTGCACAATACCGACAACGCTCATTAAAGTTGAAAAGAAAAGTACAGAAAATCTTA
CTTTACCCTATAGTTGTGTTTTGTATTTCTTCAATTTTAACCATTCTTTTATTAGTTTTTGTTGTGCCACAATTTGCTGA
GATGTACGAGGCTAATCATAGCCAGTTGCCTTCTTTTACTGTCTTTTTACTTGCATTATCAGAGTTACTACAAACTTATT
TGCTACACAGTATTTTATTGGTCGTTTTATGTGTTATTTTTATTCGTATACGTTTGAAACATTCTCAGCGTCTTGTGCGA
TTAAAGAACCAGTGTATTTTTTATTCTCCTATATTAGGAAAAATAACAAAACTCTCTCGTCTCATTAATTTTAGCGGGAC
CTTATCTTTAATGTTGTATGCTAAAGTGCCATTAAATATTGCTTTACAGTCTTTTTTACCTAAACAAGCTAGCTGGCAGA
TCCAAAAAAGTTATGTGGGCGATCAATTTTTGAACCAAGCCATAGAAACAGCATTGTATTGGCTTAATTTAGGATATAGC
TTATCTGATAGCGTTTCTAGCGATTTTTTTCCACTTGAAGCTCAGCAAATGTTAAAAATTGGTGAGGAAAGTGGTCAAGT
GGCTCAAATGTTGCAGCATATTTCGGAGAAATATCAACAAGATCTTGATCACCAAGTGGATCTGTTATCCCAATTATTAG
AGCCGATGTTGATGCTAATTATTGGCGGATTGATTGGTGCGGTACTGCTCGGAATGTACCTCCCTATTTTTAATATGGGA
GCAATGATCCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(264-395)

Type II secretion system (T2SS), protein F (T2SSF)

(60-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

52.605

99.752

0.525
  pilC Haemophilus influenzae 86-028NP

51.861

99.752

0.517
  pilC Glaesserella parasuis strain SC1401

41.646

99.257

0.413

Multiple sequence alignment