Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACINK7_RS18170 Genome accession   NZ_CP173170
Coordinates   4209105..4210442 (+) Length   445 a.a.
NCBI ID   WP_404357470.1    Uniprot ID   -
Organism   Methylotuvimicrobium sp. KM1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4204105..4215442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACINK7_RS18150 (ACINK7_18150) - 4204252..4204707 (+) 456 WP_404357463.1 DUF934 domain-containing protein -
  ACINK7_RS18155 (ACINK7_18155) sucD 4205279..4206148 (-) 870 WP_404357465.1 succinate--CoA ligase subunit alpha -
  ACINK7_RS18160 (ACINK7_18160) sucC 4206145..4207311 (-) 1167 WP_404357466.1 ADP-forming succinate--CoA ligase subunit beta -
  ACINK7_RS18165 (ACINK7_18165) - 4207477..4209108 (+) 1632 WP_404357468.1 sensor histidine kinase -
  ACINK7_RS18170 (ACINK7_18170) pilR 4209105..4210442 (+) 1338 WP_404357470.1 sigma-54-dependent transcriptional regulator Regulator
  ACINK7_RS18175 (ACINK7_18175) - 4210857..4211306 (-) 450 WP_404357472.1 hypothetical protein -
  ACINK7_RS18180 (ACINK7_18180) - 4211635..4212855 (-) 1221 WP_404357474.1 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase -
  ACINK7_RS18185 (ACINK7_18185) ubiH 4212861..4214072 (-) 1212 WP_404357476.1 2-octaprenyl-6-methoxyphenyl hydroxylase -
  ACINK7_RS18190 (ACINK7_18190) pepP 4214072..4215382 (-) 1311 WP_404357478.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49350.47 Da        Isoelectric Point: 6.1475

>NTDB_id=1070398 ACINK7_RS18170 WP_404357470.1 4209105..4210442(+) (pilR) [Methylotuvimicrobium sp. KM1]
MKHPLTLVVDDEPDIRELLSITLKRMNINTLCAENVASARQLLQQHPFDLCLTDMKLPDGNGLELVEYLQSTGNTIPIAV
ITAHGNMDTAIKAMKAGAFDFISKPVDLPVLRQIVTKALQLGPDADTKERRTRHILLGESEPMRQVRSKIDKLARSQAPV
YISGESGSGKELVARLIHQQSPRSDKPFVAVNCGAIPPELMESEFFGHKKGSFSGAIADKKGLFQAAEGGTLFLDEVADL
PPSLQVKLLRAIQEKKVRSVGEQHETPVDVRILSATHKDLNQLVQEGVFRQDLYYRINVIDLNIPPLRERGDDIAQLAEH
ILASLNSNNAYQVQLSQSALTALKHYHFPGNVRELENILERAVALSDGKTIDADDLNLPINPDTVPDAPMFDPSKASLED
YLEDIERTAITIALENNRWNKTAAAKELGLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1070398 ACINK7_RS18170 WP_404357470.1 4209105..4210442(+) (pilR) [Methylotuvimicrobium sp. KM1]
ATGAAACACCCCTTGACTTTAGTCGTCGACGACGAGCCGGACATCAGAGAGCTTTTAAGCATTACGCTCAAGCGCATGAA
CATCAATACCTTGTGCGCGGAAAATGTCGCCTCGGCTCGCCAGTTGTTGCAACAACATCCGTTCGATCTTTGCCTGACCG
ATATGAAATTACCTGACGGCAACGGGCTCGAATTGGTCGAATACCTCCAAAGCACGGGCAACACGATTCCGATTGCCGTG
ATTACCGCACACGGGAACATGGACACTGCGATCAAGGCAATGAAAGCCGGCGCCTTCGACTTTATCTCGAAACCGGTCGA
TTTACCGGTGCTTCGGCAAATCGTCACGAAGGCCTTACAATTAGGCCCCGATGCCGACACCAAGGAAAGACGCACACGAC
ATATTTTATTGGGAGAATCGGAGCCGATGCGCCAAGTCCGGTCTAAAATCGACAAATTGGCACGTAGCCAGGCGCCGGTC
TATATCAGCGGCGAATCGGGGTCGGGTAAGGAATTGGTGGCGCGCTTGATTCATCAGCAAAGCCCGCGTAGCGATAAACC
TTTTGTTGCCGTAAACTGCGGCGCAATTCCGCCCGAACTCATGGAAAGCGAGTTTTTCGGACATAAAAAAGGCAGCTTCA
GCGGAGCAATTGCCGATAAAAAAGGTTTATTTCAAGCGGCCGAGGGCGGTACGCTGTTTCTCGATGAAGTGGCCGATTTG
CCTCCCTCGCTGCAAGTCAAATTGCTCCGCGCGATTCAGGAAAAAAAAGTTCGCTCGGTCGGCGAGCAACACGAAACGCC
GGTCGATGTTCGCATCCTGAGCGCCACGCATAAAGATTTGAATCAATTGGTTCAGGAAGGGGTTTTTCGGCAAGATTTAT
ACTACCGGATCAATGTCATCGATCTCAATATTCCGCCGCTTCGCGAACGAGGCGATGATATCGCGCAACTGGCCGAACAT
ATTCTAGCCTCGTTAAATAGTAACAACGCTTATCAAGTCCAGCTCTCGCAATCGGCGCTGACTGCATTGAAACACTATCA
TTTTCCGGGCAATGTTAGGGAACTCGAGAATATTCTGGAGCGCGCCGTTGCGCTCAGCGACGGCAAAACGATCGATGCGG
ACGATTTAAATCTACCGATTAATCCGGACACCGTCCCTGATGCGCCCATGTTCGATCCATCTAAAGCGTCGTTGGAAGAT
TATTTGGAAGATATCGAGCGAACCGCCATTACTATCGCACTCGAAAATAACCGATGGAATAAAACCGCAGCGGCAAAAGA
GCTGGGGTTATCGTTCCGATCATTGCGTTACCGATTAAAAAAACTGGGCTTGGACTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-302)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.535

100

0.638
  pilR Acinetobacter baumannii strain A118

53.017

100

0.553
  luxO Vibrio cholerae strain A1552

41.294

90.337

0.373

Multiple sequence alignment