Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACIO6V_RS00045 | Genome accession | NZ_CP173167 |
| Coordinates | 10314..10868 (+) | Length | 184 a.a. |
| NCBI ID | WP_010690103.1 | Uniprot ID | - |
| Organism | Ligilactobacillus animalis strain D27 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5314..15868
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIO6V_RS00030 (ACIO6V_00030) | gyrA | 6450..8912 (+) | 2463 | WP_035447011.1 | DNA gyrase subunit A | - |
| ACIO6V_RS00035 (ACIO6V_00035) | - | 9011..9646 (-) | 636 | WP_404388311.1 | NAD(P)-dependent oxidoreductase | - |
| ACIO6V_RS00040 (ACIO6V_00040) | rpsF | 9987..10277 (+) | 291 | WP_004049701.1 | 30S ribosomal protein S6 | - |
| ACIO6V_RS00045 (ACIO6V_00045) | ssb | 10314..10868 (+) | 555 | WP_010690103.1 | single-stranded DNA-binding protein | Machinery gene |
| ACIO6V_RS00050 (ACIO6V_00050) | rpsR | 10890..11126 (+) | 237 | WP_003695889.1 | 30S ribosomal protein S18 | - |
| ACIO6V_RS00055 (ACIO6V_00055) | - | 11685..12011 (-) | 327 | WP_036687233.1 | hypothetical protein | - |
| ACIO6V_RS00060 (ACIO6V_00060) | - | 12376..12582 (+) | 207 | WP_066023738.1 | hypothetical protein | - |
| ACIO6V_RS00065 (ACIO6V_00065) | - | 12659..13642 (-) | 984 | WP_035447000.1 | DUF1002 domain-containing protein | - |
| ACIO6V_RS00070 (ACIO6V_00070) | pnuC | 13921..14691 (+) | 771 | WP_035446998.1 | nicotinamide riboside transporter PnuC | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20145.85 Da Isoelectric Point: 4.6382
>NTDB_id=1070358 ACIO6V_RS00045 WP_010690103.1 10314..10868(+) (ssb) [Ligilactobacillus animalis strain D27]
MINSVVLVGRLTRDPELRYTPSGAAVASFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIEGRIQTR
SYENQQGQRVYVTEVLAENFSLLESKAESERYRAQHGNSNANVQGSAPSNDMQSSNPFGTPANNQTNDAFGGNGFDTNTN
NSNNAADPFAGGQQIDISDDDLPF
MINSVVLVGRLTRDPELRYTPSGAAVASFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIEGRIQTR
SYENQQGQRVYVTEVLAENFSLLESKAESERYRAQHGNSNANVQGSAPSNDMQSSNPFGTPANNQTNDAFGGNGFDTNTN
NSNNAADPFAGGQQIDISDDDLPF
Nucleotide
Download Length: 555 bp
>NTDB_id=1070358 ACIO6V_RS00045 WP_010690103.1 10314..10868(+) (ssb) [Ligilactobacillus animalis strain D27]
TTGATCAATTCAGTTGTTCTAGTAGGTCGTTTGACCCGAGATCCTGAACTGCGCTACACGCCTTCAGGGGCAGCCGTGGC
AAGCTTTACTGTCGCGATCGACCGTCGTTTCACTAACCAACAAGGTCAACGTGAAGCTGATTTCATCAATTGCGTAATGT
GGCGTAAAGCAGCCGAAAACTTTGCTAACTTTACCCACAAAGGTTCCTTAGTTGGGATCGAAGGACGGATCCAAACCCGT
TCTTATGAAAATCAGCAAGGTCAACGTGTTTATGTTACTGAAGTTTTAGCTGAGAATTTCTCACTTTTGGAATCCAAGGC
TGAATCAGAAAGGTATCGTGCCCAACACGGCAACAGTAACGCTAATGTGCAAGGTTCAGCTCCTTCAAATGATATGCAGT
CATCTAATCCATTTGGGACTCCAGCAAATAATCAGACCAATGATGCTTTTGGTGGTAATGGTTTTGATACCAATACAAAC
AATAGTAACAATGCTGCTGATCCATTTGCCGGTGGTCAACAGATCGATATCTCAGATGATGACTTACCATTCTAA
TTGATCAATTCAGTTGTTCTAGTAGGTCGTTTGACCCGAGATCCTGAACTGCGCTACACGCCTTCAGGGGCAGCCGTGGC
AAGCTTTACTGTCGCGATCGACCGTCGTTTCACTAACCAACAAGGTCAACGTGAAGCTGATTTCATCAATTGCGTAATGT
GGCGTAAAGCAGCCGAAAACTTTGCTAACTTTACCCACAAAGGTTCCTTAGTTGGGATCGAAGGACGGATCCAAACCCGT
TCTTATGAAAATCAGCAAGGTCAACGTGTTTATGTTACTGAAGTTTTAGCTGAGAATTTCTCACTTTTGGAATCCAAGGC
TGAATCAGAAAGGTATCGTGCCCAACACGGCAACAGTAACGCTAATGTGCAAGGTTCAGCTCCTTCAAATGATATGCAGT
CATCTAATCCATTTGGGACTCCAGCAAATAATCAGACCAATGATGCTTTTGGTGGTAATGGTTTTGATACCAATACAAAC
AATAGTAACAATGCTGCTGATCCATTTGCCGGTGGTCAACAGATCGATATCTCAGATGATGACTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.081 |
100 |
0.614 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.219 |
100 |
0.582 |