Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | ACIFYW_RS01325 | Genome accession | NZ_CP173026 |
| Coordinates | 284227..284811 (+) | Length | 194 a.a. |
| NCBI ID | WP_000902746.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain SPH 24-01 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 279227..289811
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIFYW_RS01310 (ACIFYW_01310) | tnpA | 280075..280512 (+) | 438 | WP_000503164.1 | IS200/IS605-like element IS1004 family transposase | - |
| ACIFYW_RS01315 (ACIFYW_01315) | - | 280601..283078 (-) | 2478 | WP_162797021.1 | penicillin-binding protein 1A | - |
| ACIFYW_RS01320 (ACIFYW_01320) | pilM | 283221..284237 (+) | 1017 | WP_404272691.1 | type IV pilus assembly protein PilM | Machinery gene |
| ACIFYW_RS01325 (ACIFYW_01325) | pilN | 284227..284811 (+) | 585 | WP_000902746.1 | PilN domain-containing protein | Machinery gene |
| ACIFYW_RS01330 (ACIFYW_01330) | pilO | 284804..285394 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACIFYW_RS01335 (ACIFYW_01335) | pilP | 285384..285902 (+) | 519 | WP_000792033.1 | pilus assembly protein PilP | Machinery gene |
| ACIFYW_RS01340 (ACIFYW_01340) | pilQ | 285928..287643 (+) | 1716 | WP_404272692.1 | type IV pilus secretin PilQ | Machinery gene |
| ACIFYW_RS01345 (ACIFYW_01345) | aroK | 287830..288354 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| ACIFYW_RS01350 (ACIFYW_01350) | aroB | 288382..289467 (+) | 1086 | WP_404272693.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 22022.45 Da Isoelectric Point: 9.7294
>NTDB_id=1070023 ACIFYW_RS01325 WP_000902746.1 284227..284811(+) (pilN) [Vibrio cholerae strain SPH 24-01]
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQEGGAHNG
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQEGGAHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=1070023 ACIFYW_RS01325 WP_000902746.1 284227..284811(+) (pilN) [Vibrio cholerae strain SPH 24-01]
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCCGGTGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATTTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTTATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACTGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAATTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGAGGGAGGTGCACACAATGGCTAG
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCCGGTGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATTTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTTATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACTGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAATTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGAGGGAGGTGCACACAATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
99.485 |
100 |
0.995 |
| pilN | Vibrio campbellii strain DS40M4 |
60.452 |
91.237 |
0.552 |