Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACIHQS_RS14290 Genome accession   NZ_CP173025
Coordinates   3007770..3008420 (+) Length   216 a.a.
NCBI ID   WP_404228775.1    Uniprot ID   -
Organism   Acinetobacter venetianus strain AVYS1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3002770..3013420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQS_RS14275 (ACIHQS_14275) - 3003794..3004774 (-) 981 WP_404228769.1 putative solute-binding protein -
  ACIHQS_RS14280 (ACIHQS_14280) - 3004901..3005719 (-) 819 WP_023013771.1 NAD-dependent epimerase/dehydratase family protein -
  ACIHQS_RS14285 (ACIHQS_14285) recG 3005738..3007783 (+) 2046 WP_404228773.1 ATP-dependent DNA helicase RecG -
  ACIHQS_RS14290 (ACIHQS_14290) comF 3007770..3008420 (+) 651 WP_404228775.1 ComF family protein Machinery gene
  ACIHQS_RS14295 (ACIHQS_14295) - 3008404..3008811 (-) 408 WP_404228778.1 NUDIX domain-containing protein -
  ACIHQS_RS14300 (ACIHQS_14300) - 3008821..3009405 (-) 585 WP_192413928.1 TIGR00730 family Rossman fold protein -
  ACIHQS_RS14305 (ACIHQS_14305) - 3009578..3010591 (+) 1014 WP_004877674.1 CorA family divalent cation transporter -
  ACIHQS_RS14310 (ACIHQS_14310) - 3010593..3011126 (+) 534 WP_404228782.1 hypothetical protein -
  ACIHQS_RS14315 (ACIHQS_14315) - 3011177..3011464 (-) 288 WP_404228784.1 lipid asymmetry maintenance protein MlaB -
  ACIHQS_RS14320 (ACIHQS_14320) - 3011476..3012108 (-) 633 WP_007480583.1 phospholipid-binding protein MlaC -
  ACIHQS_RS14325 (ACIHQS_14325) - 3012128..3012802 (-) 675 WP_004877679.1 outer membrane lipid asymmetry maintenance protein MlaD -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25109.46 Da        Isoelectric Point: 9.2061

>NTDB_id=1070005 ACIHQS_RS14290 WP_404228775.1 3007770..3008420(+) (comF) [Acinetobacter venetianus strain AVYS1]
MPMFNLLRKQTRQLFDYFTPCDLCDVGIKQQFGVCSNCWQQLPWLKQQIQRHEQHIYVACHYQYPIDRIIQQFKYEQKLE
YERLLAGLLLQLKLPKIQAIVPMPISTDRLIERGYNQSLLLAKTLSQYLNVPIWQPVQRLAQHSQKGLTRLERLDHIEQQ
FIACPPNKIRYRNVMIVDDVVTTGSSIHALSEILKQLGCQKIHAICLAAGGVKPSA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1070005 ACIHQS_RS14290 WP_404228775.1 3007770..3008420(+) (comF) [Acinetobacter venetianus strain AVYS1]
ATGCCTATGTTTAATTTATTACGTAAACAAACCCGACAGTTGTTTGATTATTTTACGCCATGTGATTTATGTGATGTGGG
CATCAAGCAACAGTTTGGCGTTTGTTCAAATTGTTGGCAACAATTGCCGTGGTTAAAACAACAAATTCAACGTCATGAAC
AGCATATTTACGTTGCTTGCCATTATCAATATCCGATTGATCGTATTATTCAACAGTTTAAATATGAGCAAAAACTTGAA
TATGAACGGCTATTAGCAGGGCTTTTATTACAACTCAAATTGCCTAAAATACAGGCCATTGTGCCTATGCCGATTTCAAC
AGATCGCTTGATTGAACGAGGCTATAATCAGTCACTTCTGCTCGCTAAAACACTGAGTCAGTATCTGAATGTTCCAATCT
GGCAACCTGTACAACGCTTAGCACAGCATTCACAGAAAGGCCTAACTCGCTTAGAGCGGCTTGATCATATTGAACAACAA
TTTATTGCATGCCCACCAAATAAAATCCGTTATCGGAATGTCATGATCGTGGATGACGTGGTGACGACGGGCAGCTCAAT
CCATGCACTTTCAGAAATACTGAAACAATTGGGCTGCCAAAAAATTCATGCCATTTGTCTCGCTGCTGGCGGTGTTAAGC
CATCTGCATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

64.593

96.759

0.625
  comF Acinetobacter baumannii D1279779

63.636

96.759

0.616

Multiple sequence alignment