Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ACG2K1_RS08315 Genome accession   NZ_CP173024
Coordinates   1660366..1661169 (+) Length   267 a.a.
NCBI ID   WP_395429186.1    Uniprot ID   -
Organism   Neisseria sp. 23W00296     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1655366..1666169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG2K1_RS08295 (ACG2K1_08295) - 1655436..1657364 (+) 1929 WP_395429182.1 ABC-F family ATP-binding cassette domain-containing protein -
  ACG2K1_RS08300 (ACG2K1_08300) - 1657379..1657897 (+) 519 WP_395429183.1 hypothetical protein -
  ACG2K1_RS08305 (ACG2K1_08305) rlmB 1658182..1658937 (+) 756 WP_009427194.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACG2K1_RS08310 (ACG2K1_08310) rluD 1659249..1660367 (-) 1119 WP_395429185.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACG2K1_RS08315 (ACG2K1_08315) comL 1660366..1661169 (+) 804 WP_395429186.1 outer membrane protein assembly factor BamD Machinery gene
  ACG2K1_RS08320 (ACG2K1_08320) pdxH 1661263..1661895 (+) 633 WP_094030986.1 pyridoxamine 5'-phosphate oxidase -
  ACG2K1_RS08325 (ACG2K1_08325) thiD 1662056..1662877 (+) 822 WP_395429187.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACG2K1_RS08330 (ACG2K1_08330) - 1663152..1663637 (-) 486 WP_198344882.1 MFS transporter -
  ACG2K1_RS08335 (ACG2K1_08335) - 1663621..1664397 (-) 777 WP_009427204.1 MFS transporter -
  ACG2K1_RS08340 (ACG2K1_08340) guaD 1664414..1665718 (-) 1305 WP_395429188.1 guanine deaminase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31076.07 Da        Isoelectric Point: 9.1206

>NTDB_id=1069963 ACG2K1_RS08315 WP_395429186.1 1660366..1661169(+) (comL) [Neisseria sp. 23W00296]
MKKILLVALLGATLSGCASKGTSDKDAQITQDWSVEKLYAEAQDELNSNNYTRAVKLYELLESRFPQGRYAQQAQLDTAY
AYYKDEEREKALAAVERFQKLHPQHPNMDYALYLKGLILFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVRRYPQS
KYVEDATKRMTKLVDALAGNEMAVARYYAKRGAYLAAANRAQNIVTGFQNTRYVEEALAVMELSYRKMERPQLADDTRRI
LEKNFPQSPYLTRSWKDNDAPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1069963 ACG2K1_RS08315 WP_395429186.1 1660366..1661169(+) (comL) [Neisseria sp. 23W00296]
ATGAAAAAAATTCTTTTAGTAGCGTTGCTGGGTGCGACGCTGTCCGGCTGTGCAAGTAAAGGCACAAGTGACAAAGACGC
GCAAATCACCCAAGACTGGTCGGTGGAAAAACTGTACGCCGAAGCGCAAGACGAGTTGAACAGCAACAATTATACGCGTG
CCGTCAAGTTATATGAACTGCTCGAATCCCGCTTCCCGCAAGGCCGTTACGCGCAGCAGGCGCAGCTTGACACGGCCTAT
GCCTATTACAAGGACGAAGAGCGGGAAAAGGCGCTCGCCGCCGTGGAACGCTTCCAAAAGCTGCACCCGCAGCATCCGAA
CATGGACTACGCCCTTTATCTCAAAGGGCTGATTCTGTTTAACGAAGACCAATCCTTCCTCAACAAACTCGCCTCGCAGG
ACTGGTCCGACCGCGATCCCAAAGCCAACCGAGAAGCCTATCAGGCCTTTGCCGAGCTGGTTCGCCGCTATCCGCAGAGC
AAATACGTCGAAGACGCCACCAAGCGCATGACCAAGCTGGTGGACGCGCTGGCCGGCAACGAAATGGCCGTCGCCCGCTA
CTACGCCAAACGCGGCGCCTACCTCGCCGCCGCCAACCGGGCGCAAAACATCGTCACCGGCTTCCAAAACACCCGCTATG
TCGAAGAAGCGCTGGCCGTGATGGAACTCTCCTACCGCAAAATGGAGCGCCCGCAGCTTGCCGACGACACCCGCCGCATC
TTGGAAAAAAACTTCCCGCAAAGCCCCTACCTGACCCGCTCGTGGAAAGACAACGACGCCCCCTGGTGGCGTTATTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

77.444

99.625

0.772
  comL Neisseria meningitidis MC58

77.068

99.625

0.768

Multiple sequence alignment