Detailed information NTG1069252

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACFELF_RS24870
• Genome accession: NZ_CP172851
• Coordinates: 5306663..5308000 (+)
• Length: 445 a.a.
• NCBI ID: WP_003110427.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 238637E_ID016
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5301663..5313000

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFELF_RS24845 (ACFELF_24845)	pgeF	5301806..5302534 (-)	729	WP_012614543.1	peptidoglycan editing factor PgeF	-
ACFELF_RS24850 (ACFELF_24850)	rluD	5302531..5303493 (-)	963	WP_003094686.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ACFELF_RS24855 (ACFELF_24855)	-	5303639..5304664 (+)	1026	WP_003102590.1	outer membrane protein assembly factor BamD	-
ACFELF_RS24860 (ACFELF_24860)	-	5304821..5305066 (+)	246	WP_023115580.1	PP0621 family protein	-
ACFELF_RS24865 (ACFELF_24865)	pilS	5305056..5306648 (+)	1593	WP_003094692.1	two-component system sensor histidine kinase PilS	Regulator
ACFELF_RS24870 (ACFELF_24870)	pilR	5306663..5308000 (+)	1338	WP_003110427.1	two-component system response regulator PilR	Regulator
ACFELF_RS24875 (ACFELF_24875)	thiO	5308046..5309140 (-)	1095	WP_023103512.1	glycine oxidase ThiO	-
ACFELF_RS24880 (ACFELF_24880)	-	5309280..5309780 (+)	501	WP_003116259.1	GspH/FimT family pseudopilin	-
ACFELF_RS24885 (ACFELF_24885)	-	5309903..5310391 (+)	489	WP_003141552.1	GspH/FimT family pseudopilin	-
ACFELF_RS24890 (ACFELF_24890)	pilV	5310401..5310925 (+)	525	WP_003116261.1	type IV pilus modification protein PilV	Machinery gene
ACFELF_RS24895 (ACFELF_24895)	-	5310934..5311749 (+)	816	WP_003116262.1	PilW family protein	-
ACFELF_RS24900 (ACFELF_24900)	-	5311746..5312351 (+)	606	WP_003116263.1	PilX N-terminal domain-containing pilus assembly protein	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49723.03 Da
• Isoelectric Point: 5.8638

>NTDB_id=1069252 ACFELF_RS24870 WP_003110427.1 5306663..5308000(+) (pilR) [Pseudomonas aeruginosa strain 238637E_ID016]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADRI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide

• Length: 1338 bp

>NTDB_id=1069252 ACFELF_RS24870 WP_003110427.1 5306663..5308000(+) (pilR) [Pseudomonas aeruginosa strain 238637E_ID016]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGATCGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTATACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCGGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGATATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (135-301)

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	99.775	100	0.998
pilR	Acinetobacter baumannii strain A118	51.198	100	0.528
luxO	Vibrio cholerae strain A1552	38.17	100	0.384