Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ACF1RT_RS04830 Genome accession   NZ_CP172847
Coordinates   949409..950098 (+) Length   229 a.a.
NCBI ID   WP_002293310.1    Uniprot ID   -
Organism   Streptococcus mutans strain DPC6143     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 944409..955098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS04805 (ACF1RT_04805) - 945137..945370 (+) 234 WP_002262193.1 DUF1858 domain-containing protein -
  ACF1RT_RS04810 (ACF1RT_04810) - 945370..946734 (+) 1365 WP_226710998.1 DUF438 domain-containing protein -
  ACF1RT_RS04815 (ACF1RT_04815) - 946861..947589 (-) 729 WP_002264496.1 ABC transporter permease -
  ACF1RT_RS04820 (ACF1RT_04820) - 947586..948326 (-) 741 WP_019313625.1 ABC transporter permease -
  ACF1RT_RS04825 (ACF1RT_04825) - 948326..949234 (-) 909 WP_400260338.1 ABC transporter ATP-binding protein -
  ACF1RT_RS04830 (ACF1RT_04830) scnR 949409..950098 (+) 690 WP_002293310.1 response regulator transcription factor Regulator
  ACF1RT_RS04835 (ACF1RT_04835) scnK 950099..951406 (+) 1308 WP_002293308.1 sensor histidine kinase KdpD Regulator
  ACF1RT_RS04840 (ACF1RT_04840) truB 951523..952404 (+) 882 WP_400260339.1 tRNA pseudouridine(55) synthase TruB -
  ACF1RT_RS04845 (ACF1RT_04845) - 952435..953355 (+) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  ACF1RT_RS04850 (ACF1RT_04850) spx 953416..953829 (+) 414 WP_002263835.1 transcriptional regulator Spx -
  ACF1RT_RS04855 (ACF1RT_04855) - 953822..954100 (+) 279 WP_002264502.1 UPF0223 family protein -
  ACF1RT_RS04860 (ACF1RT_04860) - 954090..954848 (+) 759 WP_002264503.1 inositol monophosphatase family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26227.60 Da        Isoelectric Point: 6.9650

>NTDB_id=1069087 ACF1RT_RS04830 WP_002293310.1 949409..950098(+) (scnR) [Streptococcus mutans strain DPC6143]
MNYKEKKILILDDNPEILEMVQESLNIAGFNNLTGVQSKKEALEQLGKRSFDLAILDIMLPDGSGFEVLREIRKTSTMPV
LFLSAVSDIEKQYQGFELGADDYIVKPFRPKELELRILSILKRAYPEKDDTLILPTCQVNLSQALITKGELEIQLTAKEY
SILKVLYNNQNRIVTFDQLLEKVWGLQYQGYENTMMAHIRKIRQKIEANPSKPECLLTVKGLGYKLKVS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1069087 ACF1RT_RS04830 WP_002293310.1 949409..950098(+) (scnR) [Streptococcus mutans strain DPC6143]
ATGAATTATAAAGAGAAAAAAATCTTAATTTTAGATGACAATCCAGAAATTTTAGAAATGGTGCAAGAGTCTTTAAACAT
TGCTGGTTTTAACAACCTAACAGGCGTGCAATCAAAAAAAGAGGCCTTGGAGCAACTTGGCAAAAGATCCTTTGATTTGG
CCATTTTAGACATTATGCTGCCTGATGGTTCGGGTTTTGAGGTACTAAGAGAAATTCGGAAAACTTCTACTATGCCAGTA
CTCTTTTTGTCTGCGGTATCCGACATTGAAAAGCAATACCAAGGTTTTGAGTTGGGAGCGGACGACTACATCGTCAAACC
TTTTCGTCCTAAGGAATTGGAGTTGCGAATCCTTTCTATTTTAAAAAGAGCCTATCCTGAAAAGGACGATACCCTTATTT
TACCTACTTGTCAGGTCAACCTTAGTCAAGCTTTGATTACCAAAGGAGAATTGGAAATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAAGTTTTATATAACAATCAAAATCGCATTGTTACCTTTGATCAACTCTTAGAAAAAGTTTGGGGTCTGCA
ATATCAAGGCTATGAAAATACTATGATGGCGCATATTCGCAAGATCAGGCAAAAGATTGAAGCCAATCCTTCTAAGCCAG
AATGTTTACTGACAGTTAAGGGCTTGGGTTACAAACTAAAGGTGAGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

99.127

100

0.991
  micA Streptococcus pneumoniae Cp1015

38.362

100

0.389
  vicR Streptococcus mutans UA159

36.91

100

0.376

Multiple sequence alignment