Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   ACF1RT_RS02905 Genome accession   NZ_CP172847
Coordinates   546236..547237 (+) Length   333 a.a.
NCBI ID   WP_019805473.1    Uniprot ID   -
Organism   Streptococcus mutans strain DPC6143     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 541236..552237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS02880 (ACF1RT_02880) - 541244..541762 (+) 519 WP_002262792.1 hypothetical protein -
  ACF1RT_RS02885 (ACF1RT_02885) celB 541778..543136 (+) 1359 WP_002262793.1 PTS cellobiose transporter subunit IIC -
  ACF1RT_RS02890 (ACF1RT_02890) - 543401..544171 (+) 771 WP_019805475.1 carbonic anhydrase -
  ACF1RT_RS02895 (ACF1RT_02895) - 544298..544879 (+) 582 WP_002282619.1 CDP-archaeol synthase -
  ACF1RT_RS02900 (ACF1RT_02900) - 544994..546073 (-) 1080 WP_025989504.1 Xaa-Pro peptidase family protein -
  ACF1RT_RS02905 (ACF1RT_02905) ccpA 546236..547237 (+) 1002 WP_019805473.1 catabolite control protein A Regulator
  ACF1RT_RS02910 (ACF1RT_02910) - 547385..548845 (+) 1461 WP_002278111.1 alpha-amylase -
  ACF1RT_RS02915 (ACF1RT_02915) - 548955..549953 (+) 999 WP_002278505.1 glycosyltransferase -
  ACF1RT_RS02920 (ACF1RT_02920) - 549955..551289 (+) 1335 WP_002264974.1 glycosyltransferase family 4 protein -
  ACF1RT_RS02925 (ACF1RT_02925) - 551368..551559 (+) 192 WP_002266172.1 hypothetical protein -
  ACF1RT_RS02930 (ACF1RT_02930) - 551553..552194 (+) 642 WP_002264975.1 ATPase AAA -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36650.93 Da        Isoelectric Point: 6.6213

>NTDB_id=1069079 ACF1RT_RS02905 WP_019805473.1 546236..547237(+) (ccpA) [Streptococcus mutans strain DPC6143]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFS
ILAKGIDDIATMYKYNIVLASSDEDDDKEVNVINTLFAKQVDGIIFMGHHLTEKIRAEFSRARTPVVLSGTVDLEHQLPS
VNIDHSKAAQDAVALLAKHHDKIAFVSGPFIDDINGKVRLAGYKEGLKKKGLPFKEGLVFEAQYKYQEGYQLAQRVINSG
ATAAYVAEDELAAGLLNGLFAAGMKVPEDFEIITSNDSTIALYTRPNMTSISQPIYDLGAVAMRMLTKIMNKEELEEKEI
VLNHGIRERGTTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1069079 ACF1RT_RS02905 WP_019805473.1 546236..547237(+) (ccpA) [Streptococcus mutans strain DPC6143]
ATGAACACAGATGACACAATCACTATTTATGATGTTGCCCGTGAAGCGGGAGTGTCCATGGCAACTGTCAGCCGTGTTGT
GAATGGAAATAAAAATGTCAAAGAGAATACCCGCAAAAAAGTCCTAGAAGTCATTGACCGTCTTGATTATCGGCCAAATG
CTGTGGCGCGTGGTTTGGCAAGTAAGAAAACGACTACGGTAGGTGTGGTTATCCCTAACATTGCTAATGCTTATTTTTCT
ATTTTAGCTAAGGGAATTGATGACATTGCAACCATGTATAAATATAATATTGTACTGGCTTCAAGTGATGAAGATGACGA
TAAGGAAGTCAATGTTATCAATACTTTATTTGCTAAACAGGTTGATGGTATTATTTTTATGGGACATCATTTAACTGAAA
AAATTCGCGCTGAATTTTCACGAGCACGGACACCGGTTGTTTTATCAGGTACTGTAGATCTGGAGCATCAACTCCCCAGT
GTTAATATTGATCATAGTAAGGCAGCACAAGATGCCGTAGCTTTATTGGCCAAACATCATGATAAGATTGCTTTTGTATC
GGGTCCCTTTATTGATGATATCAATGGCAAGGTACGTCTGGCTGGTTATAAAGAAGGCCTGAAAAAGAAAGGATTGCCTT
TCAAAGAAGGACTTGTTTTTGAAGCTCAATATAAGTATCAAGAAGGATATCAGTTAGCGCAGCGTGTCATTAATTCAGGC
GCAACAGCTGCTTATGTTGCTGAGGATGAGTTGGCTGCTGGGCTGTTAAATGGTTTGTTTGCTGCTGGTATGAAAGTCCC
AGAAGACTTTGAAATTATCACGAGTAATGACTCTACTATTGCGCTTTATACTCGTCCTAATATGACATCTATCAGTCAGC
CGATTTATGATTTAGGAGCAGTTGCTATGCGCATGTTAACAAAGATTATGAACAAGGAAGAATTGGAAGAAAAAGAAATT
GTTCTTAATCATGGTATCAGAGAAAGAGGAACAACTAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.078

100

0.781

  ccpA Streptococcus pneumoniae D39

75.676

100

0.757

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.589

99.399

0.553


Multiple sequence alignment