Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   ACFVP7_RS19455 Genome accession   NZ_CP172606
Coordinates   3695135..3696292 (-) Length   385 a.a.
NCBI ID   WP_396582740.1    Uniprot ID   -
Organism   Bacillus sp. SG20033     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3690135..3701292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFVP7_RS19425 (ACFVP7_19425) - 3690388..3690807 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  ACFVP7_RS19430 (ACFVP7_19430) comFC 3690881..3691603 (-) 723 WP_139345375.1 comF operon protein ComFC Machinery gene
  ACFVP7_RS19435 (ACFVP7_19435) comFB 3691567..3691863 (-) 297 WP_015483764.1 late competence protein ComFB -
  ACFVP7_RS19440 (ACFVP7_19440) comFA 3691923..3693314 (-) 1392 WP_338731154.1 ATP-dependent helicase ComFA Machinery gene
  ACFVP7_RS19445 (ACFVP7_19445) - 3693420..3694265 (-) 846 WP_003227986.1 DegV family protein -
  ACFVP7_RS19450 (ACFVP7_19450) degU 3694363..3695052 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACFVP7_RS19455 (ACFVP7_19455) degS 3695135..3696292 (-) 1158 WP_396582740.1 two-component sensor histidine kinase DegS Regulator
  ACFVP7_RS19460 (ACFVP7_19460) - 3696509..3697162 (+) 654 WP_014481055.1 YigZ family protein -
  ACFVP7_RS19465 (ACFVP7_19465) - 3697162..3698154 (+) 993 WP_014481056.1 LCP family protein -
  ACFVP7_RS19470 (ACFVP7_19470) - 3698753..3699217 (+) 465 WP_338731159.1 hypothetical protein -
  ACFVP7_RS19475 (ACFVP7_19475) - 3699266..3699721 (+) 456 WP_014481057.1 hypothetical protein -
  ACFVP7_RS19480 (ACFVP7_19480) - 3699772..3700224 (+) 453 WP_014481058.1 hypothetical protein -
  ACFVP7_RS19485 (ACFVP7_19485) - 3700300..3701079 (+) 780 WP_076457519.1 membrane-spanning protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44930.73 Da        Isoelectric Point: 6.2957

>NTDB_id=1068333 ACFVP7_RS19455 WP_396582740.1 3695135..3696292(-) (degS) [Bacillus sp. SG20033]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=1068333 ACFVP7_RS19455 WP_396582740.1 3695135..3696292(-) (degS) [Bacillus sp. SG20033]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAAGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCCGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGGTTCCAAGAAATTAAAAGTCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

99.74

100

0.997

Multiple sequence alignment