Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACFVP7_RS19430 Genome accession   NZ_CP172606
Coordinates   3690881..3691603 (-) Length   240 a.a.
NCBI ID   WP_139345375.1    Uniprot ID   -
Organism   Bacillus sp. SG20033     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3685881..3696603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFVP7_RS19395 (ACFVP7_19395) fliW 3686020..3686451 (-) 432 WP_077671018.1 flagellar assembly protein FliW -
  ACFVP7_RS19400 (ACFVP7_19400) - 3686472..3687047 (-) 576 WP_396582735.1 DUF6470 family protein -
  ACFVP7_RS19405 (ACFVP7_19405) flgL 3687094..3687990 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ACFVP7_RS19410 (ACFVP7_19410) flgK 3688001..3689524 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  ACFVP7_RS19415 (ACFVP7_19415) flgN 3689543..3690025 (-) 483 WP_077671017.1 flagellar protein FlgN -
  ACFVP7_RS19420 (ACFVP7_19420) flgM 3690041..3690307 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACFVP7_RS19425 (ACFVP7_19425) - 3690388..3690807 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  ACFVP7_RS19430 (ACFVP7_19430) comFC 3690881..3691603 (-) 723 WP_139345375.1 comF operon protein ComFC Machinery gene
  ACFVP7_RS19435 (ACFVP7_19435) comFB 3691567..3691863 (-) 297 WP_015483764.1 late competence protein ComFB -
  ACFVP7_RS19440 (ACFVP7_19440) comFA 3691923..3693314 (-) 1392 WP_338731154.1 ATP-dependent helicase ComFA Machinery gene
  ACFVP7_RS19445 (ACFVP7_19445) - 3693420..3694265 (-) 846 WP_003227986.1 DegV family protein -
  ACFVP7_RS19450 (ACFVP7_19450) degU 3694363..3695052 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACFVP7_RS19455 (ACFVP7_19455) degS 3695135..3696292 (-) 1158 WP_396582740.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27481.68 Da        Isoelectric Point: 9.3154

>NTDB_id=1068330 ACFVP7_RS19430 WP_139345375.1 3690881..3691603(-) (comFC) [Bacillus sp. SG20033]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRSRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEDRGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1068330 ACFVP7_RS19430 WP_139345375.1 3690881..3691603(-) (comFC) [Bacillus sp. SG20033]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGAGATTGCGAGGTGTGGAGAACAAGGAGCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGATCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment