Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACFVP7_RS19440 Genome accession   NZ_CP172606
Coordinates   3691923..3693314 (-) Length   463 a.a.
NCBI ID   WP_338731154.1    Uniprot ID   -
Organism   Bacillus sp. SG20033     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3686923..3698314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFVP7_RS19405 (ACFVP7_19405) flgL 3687094..3687990 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ACFVP7_RS19410 (ACFVP7_19410) flgK 3688001..3689524 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  ACFVP7_RS19415 (ACFVP7_19415) flgN 3689543..3690025 (-) 483 WP_077671017.1 flagellar protein FlgN -
  ACFVP7_RS19420 (ACFVP7_19420) flgM 3690041..3690307 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACFVP7_RS19425 (ACFVP7_19425) - 3690388..3690807 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  ACFVP7_RS19430 (ACFVP7_19430) comFC 3690881..3691603 (-) 723 WP_139345375.1 comF operon protein ComFC Machinery gene
  ACFVP7_RS19435 (ACFVP7_19435) comFB 3691567..3691863 (-) 297 WP_015483764.1 late competence protein ComFB -
  ACFVP7_RS19440 (ACFVP7_19440) comFA 3691923..3693314 (-) 1392 WP_338731154.1 ATP-dependent helicase ComFA Machinery gene
  ACFVP7_RS19445 (ACFVP7_19445) - 3693420..3694265 (-) 846 WP_003227986.1 DegV family protein -
  ACFVP7_RS19450 (ACFVP7_19450) degU 3694363..3695052 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACFVP7_RS19455 (ACFVP7_19455) degS 3695135..3696292 (-) 1158 WP_396582740.1 two-component sensor histidine kinase DegS Regulator
  ACFVP7_RS19460 (ACFVP7_19460) - 3696509..3697162 (+) 654 WP_014481055.1 YigZ family protein -
  ACFVP7_RS19465 (ACFVP7_19465) - 3697162..3698154 (+) 993 WP_014481056.1 LCP family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52600.58 Da        Isoelectric Point: 9.8518

>NTDB_id=1068331 ACFVP7_RS19440 WP_338731154.1 3691923..3693314(-) (comFA) [Bacillus sp. SG20033]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLYSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVYCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1068331 ACFVP7_RS19440 WP_338731154.1 3691923..3693314(-) (comFA) [Bacillus sp. SG20033]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGTAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTATATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTATATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATTTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.272

100

0.983

Multiple sequence alignment