Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACHGMI_RS20865 Genome accession   NZ_CP172417
Coordinates   3832506..3833195 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain AKPS2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3827506..3838195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS20830 flgN 3827708..3828190 (-) 483 WP_041351273.1 flagellar protein FlgN -
  ACHGMI_RS20835 flgM 3828206..3828472 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACHGMI_RS20840 yvyF 3828553..3828972 (-) 420 WP_017695307.1 TIGR03826 family flagellar region protein -
  ACHGMI_RS20845 comFC 3829046..3829768 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  ACHGMI_RS20850 comFB 3829732..3830014 (-) 283 Protein_4049 late competence development ComFB family protein -
  ACHGMI_RS20855 comFA 3830066..3831457 (-) 1392 WP_017695309.1 ATP-dependent helicase ComFA Machinery gene
  ACHGMI_RS20860 fakBA 3831563..3832408 (-) 846 WP_017695310.1 DegV family protein -
  ACHGMI_RS20865 degU 3832506..3833195 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACHGMI_RS20870 degS 3833278..3834435 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ACHGMI_RS20875 yvyE 3834652..3835305 (+) 654 WP_003227979.1 YigZ family protein -
  ACHGMI_RS20880 tagV 3835305..3836480 (+) 1176 WP_129093463.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ACHGMI_RS20885 tagO 3836553..3837629 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1067619 ACHGMI_RS20865 WP_003219701.1 3832506..3833195(-) (degU) [Bacillus subtilis strain AKPS2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1067619 ACHGMI_RS20865 WP_003219701.1 3832506..3833195(-) (degU) [Bacillus subtilis strain AKPS2]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment