Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACHGMI_RS20855 Genome accession   NZ_CP172417
Coordinates   3830066..3831457 (-) Length   463 a.a.
NCBI ID   WP_017695309.1    Uniprot ID   -
Organism   Bacillus subtilis strain AKPS2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3825066..3836457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS20820 flgL 3825259..3826155 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  ACHGMI_RS20825 flgK 3826166..3827689 (-) 1524 WP_041351274.1 flagellar hook-associated protein FlgK -
  ACHGMI_RS20830 flgN 3827708..3828190 (-) 483 WP_041351273.1 flagellar protein FlgN -
  ACHGMI_RS20835 flgM 3828206..3828472 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACHGMI_RS20840 yvyF 3828553..3828972 (-) 420 WP_017695307.1 TIGR03826 family flagellar region protein -
  ACHGMI_RS20845 comFC 3829046..3829768 (-) 723 WP_026113628.1 comF operon protein ComFC Machinery gene
  ACHGMI_RS20850 comFB 3829732..3830014 (-) 283 Protein_4049 late competence development ComFB family protein -
  ACHGMI_RS20855 comFA 3830066..3831457 (-) 1392 WP_017695309.1 ATP-dependent helicase ComFA Machinery gene
  ACHGMI_RS20860 fakBA 3831563..3832408 (-) 846 WP_017695310.1 DegV family protein -
  ACHGMI_RS20865 degU 3832506..3833195 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACHGMI_RS20870 degS 3833278..3834435 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ACHGMI_RS20875 yvyE 3834652..3835305 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52474.49 Da        Isoelectric Point: 9.7310

>NTDB_id=1067618 ACHGMI_RS20855 WP_017695309.1 3830066..3831457(-) (comFA) [Bacillus subtilis strain AKPS2]
MNVPVEKNISFSKELRQTLRSRHLLRTELPFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCIMMGRVSEEVPLYSWEEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEEVLIWAVCGAGKTEILFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGSPVFLFVPSVSILEKAAACFKGVDCRAESVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1067618 ACHGMI_RS20855 WP_017695309.1 3830066..3831457(-) (comFA) [Bacillus subtilis strain AKPS2]
GTGAATGTGCCAGTTGAAAAAAACATTTCCTTTTCAAAAGAATTGCGGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCCCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCTATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTATCATGATGGGCAGAGTGAGTGAGGAGGTTCCTCTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGAAGTCGATTAAACTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGGTCCTCATCTGGGCAGTTTGCGGCGCTGGAAAAACAGAAATACTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATAGCAACACCTCGCACAGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAAGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCATTCGATGTAATGATCGTTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATTCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGGAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGTCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTGATTGCCGAGCCGAATCTGTGCACGCAGAAGACAAGCATAGGAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCATTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

96.328

100

0.963

Multiple sequence alignment