Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NSU12_RS11415 Genome accession   NZ_CP172407
Coordinates   2329940..2330239 (+) Length   99 a.a.
NCBI ID   WP_034771010.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0985     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2324940..2335239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU12_RS11385 (NSU12_11385) - 2324944..2325747 (+) 804 WP_108898278.1 YqhG family protein -
  NSU12_RS11390 (NSU12_11390) - 2326288..2326458 (-) 171 WP_034770998.1 DUF2759 domain-containing protein -
  NSU12_RS11395 (NSU12_11395) - 2326529..2326771 (-) 243 WP_034771001.1 DUF2626 domain-containing protein -
  NSU12_RS11400 (NSU12_11400) - 2326910..2327611 (-) 702 WP_034771004.1 metalloregulator ArsR/SmtB family transcription factor -
  NSU12_RS11405 (NSU12_11405) comGA 2327822..2328907 (+) 1086 WP_034771006.1 competence type IV pilus ATPase ComGA Machinery gene
  NSU12_RS11410 (NSU12_11410) comGB 2328882..2329913 (+) 1032 WP_034771008.1 competence type IV pilus assembly protein ComGB -
  NSU12_RS11415 (NSU12_11415) comGC 2329940..2330239 (+) 300 WP_034771010.1 competence type IV pilus major pilin ComGC Machinery gene
  NSU12_RS11420 (NSU12_11420) comGD 2330214..2330717 (+) 504 WP_034771013.1 competence type IV pilus minor pilin ComGD -
  NSU12_RS11425 (NSU12_11425) - 2330692..2331048 (+) 357 WP_034771015.1 hypothetical protein -
  NSU12_RS11430 (NSU12_11430) comGF 2331020..2331484 (+) 465 WP_034771017.1 competence type IV pilus minor pilin ComGF -
  NSU12_RS11435 (NSU12_11435) comGG 2331432..2331905 (+) 474 WP_176458882.1 competence type IV pilus minor pilin ComGG -
  NSU12_RS11440 (NSU12_11440) - 2332006..2332191 (+) 186 WP_034771024.1 YqzE family protein -
  NSU12_RS11445 (NSU12_11445) - 2332222..2333346 (-) 1125 WP_034771027.1 hypothetical protein -
  NSU12_RS11450 (NSU12_11450) - 2333514..2334701 (-) 1188 WP_034771029.1 M14 family metallopeptidase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11080.04 Da        Isoelectric Point: 5.6913

>NTDB_id=1067499 NSU12_RS11415 WP_034771010.1 2329940..2330239(+) (comGC) [Caldifermentibacillus hisashii strain FSL W8-0985]
MLKKESAFTLIEMMIVLFVITILLLITIPNVTKHQKNISNKGCEGLENMVQAEIQAYQIDHNKLPASIDDLKNGYLKEEP
VCPDGRKIVISNGDAVIKE

Nucleotide


Download         Length: 300 bp        

>NTDB_id=1067499 NSU12_RS11415 WP_034771010.1 2329940..2330239(+) (comGC) [Caldifermentibacillus hisashii strain FSL W8-0985]
ATGTTGAAAAAAGAATCTGCATTTACGTTAATCGAGATGATGATCGTTCTGTTCGTCATCACTATTTTACTGCTTATAAC
CATTCCAAACGTGACAAAACACCAGAAAAATATCAGCAATAAAGGCTGTGAAGGATTAGAAAATATGGTTCAGGCAGAAA
TCCAAGCCTATCAAATAGATCATAATAAATTACCTGCTTCTATTGATGACTTGAAAAACGGTTATTTAAAAGAAGAACCG
GTATGTCCGGATGGAAGGAAGATTGTTATCTCTAATGGTGACGCAGTTATCAAAGAGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

53.684

95.96

0.515
  comGC Staphylococcus aureus MW2

46.939

98.99

0.465
  comGC Staphylococcus aureus N315

46.939

98.99

0.465

Multiple sequence alignment