Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | NSU12_RS11405 | Genome accession | NZ_CP172407 |
| Coordinates | 2327822..2328907 (+) | Length | 361 a.a. |
| NCBI ID | WP_034771006.1 | Uniprot ID | A0A090IWD5 |
| Organism | Caldifermentibacillus hisashii strain FSL W8-0985 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2322822..2333907
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSU12_RS11380 (NSU12_11380) | - | 2323281..2324975 (+) | 1695 | WP_041846288.1 | DEAD/DEAH box helicase | - |
| NSU12_RS11385 (NSU12_11385) | - | 2324944..2325747 (+) | 804 | WP_108898278.1 | YqhG family protein | - |
| NSU12_RS11390 (NSU12_11390) | - | 2326288..2326458 (-) | 171 | WP_034770998.1 | DUF2759 domain-containing protein | - |
| NSU12_RS11395 (NSU12_11395) | - | 2326529..2326771 (-) | 243 | WP_034771001.1 | DUF2626 domain-containing protein | - |
| NSU12_RS11400 (NSU12_11400) | - | 2326910..2327611 (-) | 702 | WP_034771004.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| NSU12_RS11405 (NSU12_11405) | comGA | 2327822..2328907 (+) | 1086 | WP_034771006.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| NSU12_RS11410 (NSU12_11410) | comGB | 2328882..2329913 (+) | 1032 | WP_034771008.1 | competence type IV pilus assembly protein ComGB | - |
| NSU12_RS11415 (NSU12_11415) | comGC | 2329940..2330239 (+) | 300 | WP_034771010.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| NSU12_RS11420 (NSU12_11420) | comGD | 2330214..2330717 (+) | 504 | WP_034771013.1 | competence type IV pilus minor pilin ComGD | - |
| NSU12_RS11425 (NSU12_11425) | - | 2330692..2331048 (+) | 357 | WP_034771015.1 | hypothetical protein | - |
| NSU12_RS11430 (NSU12_11430) | comGF | 2331020..2331484 (+) | 465 | WP_034771017.1 | competence type IV pilus minor pilin ComGF | - |
| NSU12_RS11435 (NSU12_11435) | comGG | 2331432..2331905 (+) | 474 | WP_176458882.1 | competence type IV pilus minor pilin ComGG | - |
| NSU12_RS11440 (NSU12_11440) | - | 2332006..2332191 (+) | 186 | WP_034771024.1 | YqzE family protein | - |
| NSU12_RS11445 (NSU12_11445) | - | 2332222..2333346 (-) | 1125 | WP_034771027.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 361 a.a. Molecular weight: 40615.22 Da Isoelectric Point: 7.5768
>NTDB_id=1067498 NSU12_RS11405 WP_034771006.1 2327822..2328907(+) (comGA) [Caldifermentibacillus hisashii strain FSL W8-0985]
MPNSIETRAREILEHALSLHATDIHIIPKSKHASVLFRLSHKLIPIMTIELEETERLISYMKFQAAMDIGEKRKPQNGSF
QIDIGGLSVGLRLSTLPSIFAESLVIRILPQESYIPFQQLSLFPKSLRLLLAMLKFSHGLIIFTGPTGSGKTTTLYSLLQ
HSTKSLGRNVITLEDPVEKNSEDLLQVQVNEKAGITYNTGLKAILRHDPDIIMVGEIRDSETAHIAIRAALTGHLVLTTM
HTKDSKGALYRLIEFGVNWHEIEQTLVAVTAQRLVELICPYCLEEECPVYCNQNKNKRTAVYEILYGRALKEALLEMKGE
AFSARYPTLGQLIAKGIALGFIKKSEYERWVHDIETKSLEN
MPNSIETRAREILEHALSLHATDIHIIPKSKHASVLFRLSHKLIPIMTIELEETERLISYMKFQAAMDIGEKRKPQNGSF
QIDIGGLSVGLRLSTLPSIFAESLVIRILPQESYIPFQQLSLFPKSLRLLLAMLKFSHGLIIFTGPTGSGKTTTLYSLLQ
HSTKSLGRNVITLEDPVEKNSEDLLQVQVNEKAGITYNTGLKAILRHDPDIIMVGEIRDSETAHIAIRAALTGHLVLTTM
HTKDSKGALYRLIEFGVNWHEIEQTLVAVTAQRLVELICPYCLEEECPVYCNQNKNKRTAVYEILYGRALKEALLEMKGE
AFSARYPTLGQLIAKGIALGFIKKSEYERWVHDIETKSLEN
Nucleotide
Download Length: 1086 bp
>NTDB_id=1067498 NSU12_RS11405 WP_034771006.1 2327822..2328907(+) (comGA) [Caldifermentibacillus hisashii strain FSL W8-0985]
TTGCCGAACTCGATTGAAACACGGGCAAGGGAAATTTTGGAGCACGCCCTTTCTTTACATGCAACAGATATTCATATCAT
CCCCAAATCAAAACATGCTTCCGTTCTATTTCGATTGTCTCATAAACTCATCCCCATAATGACAATCGAACTTGAGGAAA
CGGAAAGATTAATTTCATATATGAAGTTTCAGGCAGCAATGGATATCGGCGAAAAAAGAAAACCCCAGAACGGTTCTTTT
CAAATAGATATCGGGGGGCTATCTGTCGGACTTCGATTATCCACTTTGCCTTCCATATTCGCTGAAAGTTTGGTCATCCG
TATATTACCACAGGAATCATACATCCCATTTCAACAATTATCCTTATTCCCAAAATCACTGAGACTACTGTTAGCCATGT
TAAAGTTTTCCCACGGTTTAATCATATTTACAGGACCAACCGGATCGGGCAAAACAACAACTTTATATTCTCTTCTCCAA
CATTCGACAAAATCTCTTGGCAGGAATGTCATCACCTTGGAAGATCCTGTTGAAAAAAATAGTGAAGATTTACTTCAAGT
TCAAGTAAATGAAAAAGCCGGCATTACGTATAATACCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATTATTATGG
TCGGCGAAATTCGTGATAGTGAGACAGCGCATATTGCCATTCGAGCAGCATTAACCGGTCATTTAGTATTGACAACGATG
CATACGAAAGATTCAAAAGGTGCATTGTACCGGTTAATCGAATTTGGTGTTAATTGGCATGAAATTGAACAAACTTTGGT
AGCAGTGACGGCCCAAAGATTAGTCGAATTAATTTGTCCTTACTGTTTAGAAGAAGAATGTCCTGTCTATTGCAACCAGA
ATAAAAATAAGCGTACTGCCGTTTATGAAATTTTGTACGGTCGTGCATTAAAGGAAGCACTGTTGGAAATGAAGGGTGAA
GCATTTTCGGCGCGCTATCCGACTTTGGGCCAATTGATTGCAAAAGGTATTGCTCTCGGATTTATCAAGAAAAGTGAGTA
TGAAAGATGGGTGCATGATATTGAGACAAAGTCGCTGGAAAATTGA
TTGCCGAACTCGATTGAAACACGGGCAAGGGAAATTTTGGAGCACGCCCTTTCTTTACATGCAACAGATATTCATATCAT
CCCCAAATCAAAACATGCTTCCGTTCTATTTCGATTGTCTCATAAACTCATCCCCATAATGACAATCGAACTTGAGGAAA
CGGAAAGATTAATTTCATATATGAAGTTTCAGGCAGCAATGGATATCGGCGAAAAAAGAAAACCCCAGAACGGTTCTTTT
CAAATAGATATCGGGGGGCTATCTGTCGGACTTCGATTATCCACTTTGCCTTCCATATTCGCTGAAAGTTTGGTCATCCG
TATATTACCACAGGAATCATACATCCCATTTCAACAATTATCCTTATTCCCAAAATCACTGAGACTACTGTTAGCCATGT
TAAAGTTTTCCCACGGTTTAATCATATTTACAGGACCAACCGGATCGGGCAAAACAACAACTTTATATTCTCTTCTCCAA
CATTCGACAAAATCTCTTGGCAGGAATGTCATCACCTTGGAAGATCCTGTTGAAAAAAATAGTGAAGATTTACTTCAAGT
TCAAGTAAATGAAAAAGCCGGCATTACGTATAATACCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATTATTATGG
TCGGCGAAATTCGTGATAGTGAGACAGCGCATATTGCCATTCGAGCAGCATTAACCGGTCATTTAGTATTGACAACGATG
CATACGAAAGATTCAAAAGGTGCATTGTACCGGTTAATCGAATTTGGTGTTAATTGGCATGAAATTGAACAAACTTTGGT
AGCAGTGACGGCCCAAAGATTAGTCGAATTAATTTGTCCTTACTGTTTAGAAGAAGAATGTCCTGTCTATTGCAACCAGA
ATAAAAATAAGCGTACTGCCGTTTATGAAATTTTGTACGGTCGTGCATTAAAGGAAGCACTGTTGGAAATGAAGGGTGAA
GCATTTTCGGCGCGCTATCCGACTTTGGGCCAATTGATTGCAAAAGGTATTGCTCTCGGATTTATCAAGAAAAGTGAGTA
TGAAAGATGGGTGCATGATATTGAGACAAAGTCGCTGGAAAATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
56.695 |
97.23 |
0.551 |