Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | ACHZDB_RS08675 | Genome accession | NZ_CP172405 |
| Coordinates | 1916877..1917521 (+) | Length | 214 a.a. |
| NCBI ID | WP_005432827.1 | Uniprot ID | - |
| Organism | Vibrio campbellii strain LB503 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1911877..1922521
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACHZDB_RS08660 (ACHZDB_08660) | - | 1912330..1913778 (-) | 1449 | WP_079402759.1 | MSHA biogenesis protein MshI | - |
| ACHZDB_RS08665 (ACHZDB_08665) | csrD | 1913790..1915799 (-) | 2010 | WP_005432793.1 | RNase E specificity factor CsrD | - |
| ACHZDB_RS08670 (ACHZDB_08670) | ssb | 1916047..1916583 (-) | 537 | WP_005432828.1 | single-stranded DNA-binding protein | Machinery gene |
| ACHZDB_RS08675 (ACHZDB_08675) | qstR | 1916877..1917521 (+) | 645 | WP_005432827.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| ACHZDB_RS08680 (ACHZDB_08680) | galU | 1917686..1918558 (+) | 873 | WP_005432802.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| ACHZDB_RS08685 (ACHZDB_08685) | uvrA | 1918697..1921519 (+) | 2823 | WP_399423773.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 214 a.a. Molecular weight: 24551.46 Da Isoelectric Point: 8.0591
>NTDB_id=1067443 ACHZDB_RS08675 WP_005432827.1 1916877..1917521(+) (qstR) [Vibrio campbellii strain LB503]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS
Nucleotide
Download Length: 645 bp
>NTDB_id=1067443 ACHZDB_RS08675 WP_005432827.1 1916877..1917521(+) (qstR) [Vibrio campbellii strain LB503]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAAGAGTTGGTTCTATCGATAAAAAATCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAATC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAAGAGTTGGTTCTATCGATAAAAAATCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAATC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio campbellii strain DS40M4 |
100 |
100 |
1 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
89.252 |
100 |
0.893 |
| qstR | Vibrio cholerae strain A1552 |
52.336 |
100 |
0.523 |