Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACHFB9_RS05700 Genome accession   NZ_CP172404
Coordinates   1270303..1271679 (+) Length   458 a.a.
NCBI ID   WP_417070110.1    Uniprot ID   -
Organism   Niveibacterium terrae strain 24SJ04S-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1265303..1276679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFB9_RS05685 (ACHFB9_05685) - 1266026..1268257 (-) 2232 WP_417070104.1 EAL domain-containing protein -
  ACHFB9_RS05690 (ACHFB9_05690) - 1268521..1268766 (+) 246 WP_417070106.1 PP0621 family protein -
  ACHFB9_RS05695 (ACHFB9_05695) - 1268763..1270322 (+) 1560 WP_417070108.1 sensor histidine kinase -
  ACHFB9_RS05700 (ACHFB9_05700) pilR 1270303..1271679 (+) 1377 WP_417070110.1 sigma-54-dependent transcriptional regulator Regulator
  ACHFB9_RS05705 (ACHFB9_05705) ampD 1271676..1272284 (+) 609 WP_417070112.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACHFB9_RS05710 (ACHFB9_05710) - 1272877..1273638 (+) 762 WP_417070113.1 transglycosylase SLT domain-containing protein -
  ACHFB9_RS05715 (ACHFB9_05715) hemF 1273692..1274630 (-) 939 WP_417070115.1 oxygen-dependent coproporphyrinogen oxidase -
  ACHFB9_RS05720 (ACHFB9_05720) - 1274676..1275554 (-) 879 WP_417070117.1 DMT family transporter -
  ACHFB9_RS05725 (ACHFB9_05725) - 1275678..1276301 (-) 624 WP_417070119.1 MBL fold metallo-hydrolase -
  ACHFB9_RS05730 (ACHFB9_05730) - 1276303..1276587 (-) 285 WP_417070121.1 cyd operon YbgE family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50357.36 Da        Isoelectric Point: 5.0533

>NTDB_id=1067414 ACHFB9_RS05700 WP_417070110.1 1270303..1271679(+) (pilR) [Niveibacterium terrae strain 24SJ04S-2]
MICATNERRTSADAAVLVVDDEEDIRELLELTLLRMGLRSESAGTLAEARALLERGHFKLCLTDMRLPDGEGIELVREIA
EKHPYLPVAVITAFGSMENAVQVLKAGAFDYLSKPVSLEQIRALVKSVFELPKAEAGARPLAASALTGESPAMLQVRSMI
ERLSRSQAPIHISGESGSGKERGARQIHELGPRAAGPFVAVNCGAIPENLMESEFFGYRKGAFTGADADRDGFFQAANGG
TLFLDEVGDLPLTMQVKLLRAIQEKRVRRLGDTAEQAVDLRIISATHRNLKELVDQGRFRQDLFYRLNVIELHMPSLRER
REDIPGLVDTLLRRLASDSGLPVPGVQPDALAALSAYSFPGNVRELENILERALALHSDGRIEVEDLHIEPDEGEESGAV
DGVLRQSESLQDYLDRVEKAAILDAIEKTHGNRTAAARLLGVTFRSLRYRLERLGINE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1067414 ACHFB9_RS05700 WP_417070110.1 1270303..1271679(+) (pilR) [Niveibacterium terrae strain 24SJ04S-2]
ATGATCTGCGCCACGAATGAACGCCGCACTTCTGCTGATGCCGCCGTTCTGGTCGTCGACGACGAGGAGGATATTCGGGA
GTTGCTTGAGCTGACTCTGCTCAGGATGGGGCTGAGAAGCGAGTCGGCGGGTACTCTGGCCGAAGCGCGCGCCTTGCTCG
AACGCGGCCATTTCAAGCTCTGCCTGACCGATATGCGCCTTCCCGATGGCGAAGGCATCGAACTCGTTCGCGAGATCGCC
GAAAAGCATCCCTATCTGCCGGTCGCCGTGATCACCGCTTTCGGCAGCATGGAGAACGCGGTTCAGGTGCTCAAGGCCGG
CGCATTCGATTACCTGTCCAAACCGGTCTCGCTCGAACAGATCCGCGCGCTGGTCAAATCGGTCTTCGAACTGCCCAAGG
CTGAGGCCGGCGCCCGGCCGCTTGCCGCGAGTGCGCTGACCGGAGAGTCGCCGGCGATGCTCCAGGTCAGGTCGATGATC
GAGCGTCTCTCGCGCAGCCAGGCGCCGATTCATATCAGTGGCGAGTCGGGTAGCGGCAAGGAAAGGGGGGCTCGGCAGAT
CCACGAACTGGGCCCGCGGGCAGCGGGGCCTTTTGTAGCCGTCAACTGCGGCGCGATTCCCGAAAACCTGATGGAGAGCG
AGTTCTTCGGCTACCGCAAAGGGGCGTTTACCGGGGCCGATGCCGACCGGGATGGCTTCTTCCAGGCCGCGAACGGTGGC
ACGCTCTTCCTCGACGAAGTCGGTGACCTGCCTCTGACGATGCAGGTCAAGCTGTTGCGCGCGATCCAGGAAAAGCGTGT
GCGCCGGCTCGGCGACACCGCCGAGCAGGCGGTCGATCTGCGCATCATCAGTGCGACGCACCGCAACCTGAAGGAACTGG
TTGATCAGGGGCGCTTTCGGCAGGACCTTTTCTATCGTCTCAACGTGATCGAACTGCATATGCCGTCCTTGCGCGAACGC
CGCGAGGACATCCCCGGTCTCGTCGATACGCTGCTCAGACGCCTCGCCAGCGACAGCGGCCTGCCCGTGCCCGGGGTTCA
ACCCGATGCGCTTGCGGCGCTGTCCGCCTATTCCTTCCCGGGAAATGTCCGCGAGCTCGAGAACATCCTCGAGAGGGCGT
TGGCCCTGCATTCGGACGGCCGGATAGAAGTCGAGGATCTGCACATCGAACCCGATGAGGGCGAGGAGTCAGGCGCGGTG
GACGGAGTGCTCAGACAGAGCGAGTCACTTCAGGACTACCTCGACCGTGTCGAGAAGGCCGCGATCCTCGATGCAATCGA
GAAGACGCACGGCAACCGCACCGCGGCGGCGCGGCTGCTCGGCGTGACTTTCCGCTCGCTGCGCTACCGGCTCGAACGGC
TGGGGATCAATGAATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-453)

Response regulator receiver domain (Response_reg)

(16-125)

Sigma-54 interaction domain (Sigma54_activat)

(146-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.916

96.725

0.57
  pilR Acinetobacter baumannii strain A118

44.444

100

0.445

Multiple sequence alignment