Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   ACH6FR_RS07580 Genome accession   NZ_CP172379
Coordinates   1452695..1453006 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain YH013     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447695..1458006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FR_RS07560 (ACH6FR_07560) ctsE 1448564..1450123 (-) 1560 WP_020247122.1 GspE/PulE family protein Machinery gene
  ACH6FR_RS07565 (ACH6FR_07565) ctsX 1450113..1450700 (-) 588 WP_002851370.1 membrane protein Machinery gene
  ACH6FR_RS07570 (ACH6FR_07570) ctsP 1450704..1451312 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  ACH6FR_RS07575 (ACH6FR_07575) ctsD 1451305..1452717 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FR_RS07580 (ACH6FR_07580) ctsR 1452695..1453006 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  ACH6FR_RS07585 (ACH6FR_07585) nifJ 1453030..1456590 (-) 3561 WP_002887741.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ACH6FR_RS07590 (ACH6FR_07590) - 1456683..1457324 (-) 642 WP_002887739.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=1067013 ACH6FR_RS07580 WP_002855438.1 1452695..1453006(-) (ctsR) [Campylobacter jejuni strain YH013]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1067013 ACH6FR_RS07580 WP_002855438.1 1452695..1453006(-) (ctsR) [Campylobacter jejuni strain YH013]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment