Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   ACH6FR_RS07560 Genome accession   NZ_CP172379
Coordinates   1448564..1450123 (-) Length   519 a.a.
NCBI ID   WP_020247122.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH013     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1443564..1455123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FR_RS07535 (ACH6FR_07535) - 1443574..1444008 (+) 435 WP_002779263.1 flagellar protein FlgN -
  ACH6FR_RS07540 (ACH6FR_07540) flgK 1444018..1445844 (+) 1827 WP_002867248.1 flagellar hook-associated protein FlgK -
  ACH6FR_RS07545 (ACH6FR_07545) - 1445861..1446625 (+) 765 WP_002851318.1 TIGR02757 family protein -
  ACH6FR_RS07550 (ACH6FR_07550) - 1446629..1447393 (+) 765 WP_002855821.1 TSUP family transporter -
  ACH6FR_RS07555 (ACH6FR_07555) ctsF 1447386..1448567 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  ACH6FR_RS07560 (ACH6FR_07560) ctsE 1448564..1450123 (-) 1560 WP_020247122.1 GspE/PulE family protein Machinery gene
  ACH6FR_RS07565 (ACH6FR_07565) ctsX 1450113..1450700 (-) 588 WP_002851370.1 membrane protein Machinery gene
  ACH6FR_RS07570 (ACH6FR_07570) ctsP 1450704..1451312 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  ACH6FR_RS07575 (ACH6FR_07575) ctsD 1451305..1452717 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ACH6FR_RS07580 (ACH6FR_07580) ctsR 1452695..1453006 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 60169.88 Da        Isoelectric Point: 5.5587

>NTDB_id=1067009 ACH6FR_RS07560 WP_020247122.1 1448564..1450123(-) (ctsE) [Campylobacter jejuni strain YH013]
MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFNKLANFCNLHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRKTQDGSFELDFENERYDFRVSCL
PLIYGESVVIRILKHDKEILDLYKLNFGDKNLEILKKILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDP
IEYKIPLVQQILLNSKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMQ
AKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLSCAIRENQD
KTILMELAKKYGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=1067009 ACH6FR_RS07560 WP_020247122.1 1448564..1450123(-) (ctsE) [Campylobacter jejuni strain YH013]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCACTAAATTTAA
TATCACTTCTTGGGATTTTTTTAACAAATTAGCAAATTTTTGTAATTTGCATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAACAATGACGGCTTTATGATT
ATTAGATCCAAACCTTGTTCTTTAGAGCTTTTAGAGCAAGTTAAGACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAATTAAAGATAGCTAAAATTTTAAATCAAATTCGCATTCAAGAGGAGATTAAAAGATTAAGCATTAAGCTTA
GACTTGAATGGCAAGAAAATCACAAAAGAGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAAGCAAGGAATGATGACGCTTTGATTAGATTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATATTTATGAAGCTTTGGTTTTTCATGTCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACGCAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGTTTCATGTTTG
CCTTTGATTTATGGTGAAAGTGTTGTTATAAGAATTTTAAAACATGATAAAGAAATTTTGGATTTGTATAAACTAAATTT
TGGAGATAAAAATTTAGAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAATGATTTTATTAACCGGTCCTACAGGTA
GTGGTAAAAGCACAACTTTATACGCGTGTTTAAATGAGTTGAAAAGTATTGAAAAAAAGATTATTTCCGCAGAAGATCCT
ATAGAATATAAAATTCCTTTAGTGCAGCAAATTTTGCTCAATTCAAAAGTTGGAGTCGAGTTTAATAGTGTTTTAAGAGC
AATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATTCGCGATGAAGAAAGTTTAGATATTGCACTTAAAGCTT
CTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGTACCATTGATAGGCTTTTGGATATGCAA
GCAAAAAGTTACTTGATAGCATCGGCTTTGAGTCTTGTTATAGCACAGCGTTTGGTTAGAAAACTTTGTCCTTGGTGTAA
GCAAAAAAGCAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTGAGCGTTGTCATCATAGTG
GATTTTTTGGCAGAGAATTAATCGCTGAGTGCTTAGAGATCAATGAAGATTTATCTTGTGCAATTAGGGAAAATCAAGAT
AAAACGATTTTAATGGAGCTTGCAAAAAAATATGGCTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGG
TCTTACAAGTATAGATGAGCTTTTAAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

99.229

100

0.992

Multiple sequence alignment