Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACG3M1_RS06670 Genome accession   NZ_CP172347
Coordinates   1357563..1358024 (+) Length   153 a.a.
NCBI ID   WP_040012764.1    Uniprot ID   -
Organism   Clostridium sp. 10cd*     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1352563..1363024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3M1_RS06630 (ACG3M1_06630) - 1352780..1352986 (+) 207 WP_009271204.1 helix-turn-helix transcriptional regulator -
  ACG3M1_RS06635 (ACG3M1_06635) - 1353412..1354548 (+) 1137 WP_118654813.1 hypothetical protein -
  ACG3M1_RS06640 (ACG3M1_06640) - 1354568..1354918 (+) 351 WP_009271202.1 hypothetical protein -
  ACG3M1_RS06645 (ACG3M1_06645) - 1355448..1356317 (+) 870 WP_009271201.1 hypothetical protein -
  ACG3M1_RS06650 (ACG3M1_06650) - 1356335..1356583 (+) 249 WP_009271200.1 hypothetical protein -
  ACG3M1_RS06655 (ACG3M1_06655) - 1356558..1356839 (+) 282 WP_009271199.1 hypothetical protein -
  ACG3M1_RS06660 (ACG3M1_06660) - 1356814..1357299 (+) 486 WP_040012766.1 class I SAM-dependent methyltransferase -
  ACG3M1_RS06665 (ACG3M1_06665) - 1357376..1357513 (+) 138 WP_233105065.1 hypothetical protein -
  ACG3M1_RS06670 (ACG3M1_06670) ssb 1357563..1358024 (+) 462 WP_040012764.1 single-stranded DNA-binding protein Machinery gene
  ACG3M1_RS06675 (ACG3M1_06675) - 1358042..1358194 (+) 153 WP_009271196.1 hypothetical protein -
  ACG3M1_RS06680 (ACG3M1_06680) - 1358266..1358478 (+) 213 WP_009271195.1 hypothetical protein -
  ACG3M1_RS06685 (ACG3M1_06685) - 1358527..1359204 (+) 678 WP_009271194.1 hypothetical protein -
  ACG3M1_RS06690 (ACG3M1_06690) - 1359291..1359662 (+) 372 WP_009271193.1 hypothetical protein -
  ACG3M1_RS06695 (ACG3M1_06695) - 1359747..1359974 (+) 228 WP_083785540.1 hypothetical protein -
  ACG3M1_RS06700 (ACG3M1_06700) - 1359978..1360232 (+) 255 WP_002611232.1 hypothetical protein -
  ACG3M1_RS06705 (ACG3M1_06705) - 1360229..1360936 (+) 708 WP_009271191.1 hypothetical protein -
  ACG3M1_RS06710 (ACG3M1_06710) - 1361017..1361154 (+) 138 WP_002611501.1 hypothetical protein -
  ACG3M1_RS06715 (ACG3M1_06715) - 1361339..1361965 (+) 627 WP_118654815.1 hypothetical protein -
  ACG3M1_RS06720 (ACG3M1_06720) - 1362115..1362276 (+) 162 WP_002611225.1 hypothetical protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16570.45 Da        Isoelectric Point: 5.8884

>NTDB_id=1066575 ACG3M1_RS06670 WP_040012764.1 1357563..1358024(+) (ssb) [Clostridium sp. 10cd*]
MINRVVLVGRLTKDPVLRKTTNGASVVSFTVACNRLFKQEGQPEADFINTVVWNKTADSVAKYMHKGSLVGVEGRIQTRS
YDDKGGKRVYVTEVVADNVRFLDSRNAGDMNSAYVPGQENTQSSTAASNSAPSSSSEFTSIAALDISDDDLPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1066575 ACG3M1_RS06670 WP_040012764.1 1357563..1358024(+) (ssb) [Clostridium sp. 10cd*]
ATGATCAATAGAGTCGTATTAGTGGGAAGATTGACGAAAGATCCTGTATTACGGAAGACAACGAATGGCGCATCGGTCGT
GTCTTTTACGGTCGCATGCAACCGGCTTTTCAAACAGGAGGGACAGCCAGAAGCTGACTTCATCAACACTGTCGTCTGGA
ACAAGACCGCGGATAGTGTAGCGAAGTATATGCACAAGGGCTCTCTGGTAGGTGTAGAGGGCCGTATCCAGACGCGCAGC
TATGATGACAAGGGTGGCAAGCGTGTATATGTAACAGAGGTGGTCGCGGATAATGTGCGCTTTCTGGACAGCCGGAATGC
AGGAGATATGAACAGTGCCTACGTACCCGGACAGGAAAACACGCAGAGTAGCACTGCTGCGAGCAACAGCGCTCCATCCT
CCTCCAGTGAGTTCACGAGCATTGCAGCGCTGGATATCTCCGATGACGATCTGCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

48.235

100

0.536
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.523
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

69.281

0.412

Multiple sequence alignment