Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACH2FV_RS16690 Genome accession   NZ_CP172339
Coordinates   3211911..3212600 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis subsp. safensis strain KGU003     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3206911..3217600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH2FV_RS16655 (ACH2FV_16655) - 3206990..3207472 (-) 483 WP_326149054.1 flagellar protein FlgN -
  ACH2FV_RS16660 (ACH2FV_16660) flgM 3207491..3207754 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACH2FV_RS16665 (ACH2FV_16665) - 3207834..3208253 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  ACH2FV_RS16670 (ACH2FV_16670) comFC 3208310..3208966 (-) 657 WP_326149053.1 ComF family protein Machinery gene
  ACH2FV_RS16675 (ACH2FV_16675) - 3208993..3209286 (-) 294 WP_024423623.1 late competence development ComFB family protein -
  ACH2FV_RS16680 (ACH2FV_16680) comFA 3209335..3210732 (-) 1398 WP_395894762.1 DEAD/DEAH box helicase Machinery gene
  ACH2FV_RS16685 (ACH2FV_16685) - 3210853..3211695 (-) 843 WP_041108019.1 DegV family protein -
  ACH2FV_RS16690 (ACH2FV_16690) degU 3211911..3212600 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ACH2FV_RS16695 (ACH2FV_16695) degS 3212665..3213840 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ACH2FV_RS16700 (ACH2FV_16700) - 3214062..3214730 (+) 669 WP_012011434.1 YigZ family protein -
  ACH2FV_RS16705 (ACH2FV_16705) - 3214715..3215806 (+) 1092 WP_041108022.1 LCP family protein -
  ACH2FV_RS16710 (ACH2FV_16710) - 3215842..3216909 (-) 1068 WP_024423627.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1066534 ACH2FV_RS16690 WP_008348273.1 3211911..3212600(-) (degU) [Bacillus safensis subsp. safensis strain KGU003]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1066534 ACH2FV_RS16690 WP_008348273.1 3211911..3212600(-) (degU) [Bacillus safensis subsp. safensis strain KGU003]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACTAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCTTAGCAACTAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment