Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACH2FV_RS16680 Genome accession   NZ_CP172339
Coordinates   3209335..3210732 (-) Length   465 a.a.
NCBI ID   WP_395894762.1    Uniprot ID   -
Organism   Bacillus safensis subsp. safensis strain KGU003     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3204335..3215732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH2FV_RS16645 (ACH2FV_16645) flgL 3204536..3205444 (-) 909 WP_034281095.1 flagellar hook-associated protein FlgL -
  ACH2FV_RS16650 (ACH2FV_16650) flgK 3205454..3206974 (-) 1521 WP_218677427.1 flagellar hook-associated protein FlgK -
  ACH2FV_RS16655 (ACH2FV_16655) - 3206990..3207472 (-) 483 WP_326149054.1 flagellar protein FlgN -
  ACH2FV_RS16660 (ACH2FV_16660) flgM 3207491..3207754 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACH2FV_RS16665 (ACH2FV_16665) - 3207834..3208253 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  ACH2FV_RS16670 (ACH2FV_16670) comFC 3208310..3208966 (-) 657 WP_326149053.1 ComF family protein Machinery gene
  ACH2FV_RS16675 (ACH2FV_16675) - 3208993..3209286 (-) 294 WP_024423623.1 late competence development ComFB family protein -
  ACH2FV_RS16680 (ACH2FV_16680) comFA 3209335..3210732 (-) 1398 WP_395894762.1 DEAD/DEAH box helicase Machinery gene
  ACH2FV_RS16685 (ACH2FV_16685) - 3210853..3211695 (-) 843 WP_041108019.1 DegV family protein -
  ACH2FV_RS16690 (ACH2FV_16690) degU 3211911..3212600 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ACH2FV_RS16695 (ACH2FV_16695) degS 3212665..3213840 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ACH2FV_RS16700 (ACH2FV_16700) - 3214062..3214730 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53164.08 Da        Isoelectric Point: 9.8932

>NTDB_id=1066533 ACH2FV_RS16680 WP_395894762.1 3209335..3210732(-) (comFA) [Bacillus safensis subsp. safensis strain KGU003]
MNMDKAMELMRQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMEETCRAELTWQGELSKGQKRASERIIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGVTITVLYGGSSQRFQITPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRNNKGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHEQPLPVPTFHWIGHWKKKLKKKQLPPKVMNWMQ
RHIANKRRILLFVPSIAVMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYNVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNETAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=1066533 ACH2FV_RS16680 WP_395894762.1 3209335..3210732(-) (comFA) [Bacillus safensis subsp. safensis strain KGU003]
TTGAATATGGACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCCACA
GTCCAATTTAGATTGGCTGGAGGAGAAAGGATTAGTCAATCGGTCTCCTGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTACTTTGCTCATTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGAAGAAACATG
TCGAGCCGAATTAACATGGCAGGGAGAGCTTTCCAAAGGGCAAAAAAGAGCGTCAGAAAGGATAATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCATGGAATCGAATATGCGTTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCACGGCTTAGAAAAGCATT
TCAAGGGGTGACAATTACCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAAATAACACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAATAACAAAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGTGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACGAGCAACCATTACCCGTAC
CGACCTTTCATTGGATCGGACATTGGAAAAAGAAATTAAAAAAGAAGCAGCTGCCCCCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACAATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACGATTCCAAATGTTCAAGTGGGGGTACTTGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGGCGGGTAGGCAGACACCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGAGACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(324-420)

Type III restriction enzyme, res subunit (ResIII)

(116-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.754

98.065

0.508

Multiple sequence alignment