Detailed information NTG1066214

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACHZ97_RS03805
• Genome accession: NZ_CP172310
• Coordinates: 836117..837580 (-)
• Length: 487 a.a.
• NCBI ID: WP_396616723.1
• Uniprot ID: -
• Organism: Lysobacter soli strain P18
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	818862..842214	836117..837580	within	0

Gene organization within MGE regions

Location: 818862..842214

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHZ97_RS03730 (ACHZ97_03730)	-	818862..819317 (-)	456	WP_115841424.1	DUF721 domain-containing protein	-
ACHZ97_RS03735 (ACHZ97_03735)	-	819316..820239 (+)	924	WP_115841425.1	M23 family metallopeptidase	-
ACHZ97_RS03740 (ACHZ97_03740)	secA	820541..823270 (+)	2730	WP_396616714.1	preprotein translocase subunit SecA	-
ACHZ97_RS03745 (ACHZ97_03745)	-	823412..824353 (+)	942	WP_396617500.1	Nudix family hydrolase	-
ACHZ97_RS03750 (ACHZ97_03750)	coaE	824366..824983 (-)	618	WP_115841428.1	dephospho-CoA kinase	-
ACHZ97_RS03755 (ACHZ97_03755)	-	825030..825893 (-)	864	WP_157029412.1	A24 family peptidase	-
ACHZ97_RS03760 (ACHZ97_03760)	pilC	825910..827109 (-)	1200	WP_396617501.1	type II secretion system F family protein	Machinery gene
ACHZ97_RS03765 (ACHZ97_03765)	pilB	827170..828894 (-)	1725	WP_396616715.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACHZ97_RS03770 (ACHZ97_03770)	-	829027..830214 (-)	1188	WP_396616716.1	glycosyltransferase family 4 protein	-
ACHZ97_RS03775 (ACHZ97_03775)	-	830207..830917 (-)	711	WP_396616717.1	class I SAM-dependent methyltransferase	-
ACHZ97_RS03780 (ACHZ97_03780)	-	830951..831355 (+)	405	WP_396616718.1	GtrA family protein	-
ACHZ97_RS03785 (ACHZ97_03785)	-	831340..831915 (-)	576	WP_396616719.1	class I SAM-dependent methyltransferase	-
ACHZ97_RS03790 (ACHZ97_03790)	-	831912..833096 (-)	1185	WP_396616720.1	glycosyltransferase family 2 protein	-
ACHZ97_RS03795 (ACHZ97_03795)	-	833093..835072 (-)	1980	WP_396616721.1	glycosyltransferase 87 family protein	-
ACHZ97_RS03800 (ACHZ97_03800)	-	835166..835633 (-)	468	WP_396616722.1	pilin	-
ACHZ97_RS03805 (ACHZ97_03805)	pilR	836117..837580 (-)	1464	WP_396616723.1	sigma-54-dependent transcriptional regulator	Regulator
ACHZ97_RS03810 (ACHZ97_03810)	-	837664..839289 (-)	1626	WP_396616724.1	sensor histidine kinase	-
ACHZ97_RS03815 (ACHZ97_03815)	sucC	839506..840672 (+)	1167	WP_115841435.1	ADP-forming succinate--CoA ligase subunit beta	-
ACHZ97_RS03820 (ACHZ97_03820)	sucD	840685..841560 (+)	876	WP_115841436.1	succinate--CoA ligase subunit alpha	-
ACHZ97_RS03825 (ACHZ97_03825)	-	841831..842214 (+)	384	WP_396616725.1	endonuclease domain-containing protein	-

Sequence

Protein

• Length: 487 a.a.
• Molecular weight: 52307.99 Da
• Isoelectric Point: 6.7659

>NTDB_id=1066214 ACHZ97_RS03805 WP_396616723.1 836117..837580(-) (pilR) [Lysobacter soli strain P18]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASTLGEARGQLARNRYDLCLTDMRLPDGSGMDLVAEISQKHPETPVA
MITAFGNVEAAVEALKAGAFDFVAKPVDLAVLRDLVRHALDLNERRKSAPPADIVAARLYGQSPAMATLRGTIAKVARSQ
APVYIVGESGVGKELVARTIHAEGARSTGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQSADGGTLFLDEI
AELPLAMQVKLLRAIQEKSIRPVGANAEVPVDVRILSATHKDLAALVADGRFRQDLYYRINVIELRVPPLRERQDDLPGL
AEKVLQRLSLAQGRVFPPTLSADALDTLRAYAFPGNVRELENILERALALAEGDSLTAEDLRLPKAANTVPSATPVAATG
GTSATAPANSAAPPLMVPGQPAQAIDPRTLNPRDTASSPLPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYK
LKKLGID

Nucleotide

• Length: 1464 bp

>NTDB_id=1066214 ACHZ97_RS03805 WP_396616723.1 836117..837580(-) (pilR) [Lysobacter soli strain P18]
ATGGCTGAAACACGTAGTGCATTGGTGGTCGACGACGAACGCGACATCCGCGAACTGCTCGTCATGACCCTGGGCCGCAT
GGGCCTTCGATGCGACACCGCCTCCACGCTCGGCGAAGCCCGCGGCCAGCTCGCGCGCAATCGCTATGACCTGTGTCTGA
CGGACATGCGCCTGCCGGACGGCTCGGGCATGGACCTGGTCGCCGAGATCAGCCAGAAGCATCCGGAAACGCCGGTCGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCCGCGGTCGAGGCCTTGAAGGCCGGCGCGTTCGACTTCGTCGCCAAGCCCGT
GGACCTGGCCGTGCTGCGCGACCTGGTCCGCCACGCGCTGGACCTCAACGAACGCCGCAAGAGCGCGCCACCGGCCGACA
TCGTCGCCGCGCGCCTGTATGGCCAATCGCCGGCGATGGCGACCCTCCGCGGCACGATCGCGAAGGTCGCCCGCAGCCAG
GCGCCGGTGTACATCGTCGGCGAGTCCGGCGTGGGCAAGGAGCTCGTCGCCCGCACGATCCACGCCGAAGGCGCGCGTTC
GACCGGACCGTTCGTGCCGGTGAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGG
GCAGCTTCACCGGCGCGCATGCCGACAAGCCGGGCCTGTTCCAGAGCGCCGACGGCGGCACGCTGTTCCTGGACGAAATC
GCCGAGCTTCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGATCCGCCCGGTGGGCGCGAACGC
CGAAGTGCCGGTGGACGTGCGCATCCTGTCGGCGACGCACAAGGATCTGGCGGCGCTCGTCGCCGATGGCCGCTTCCGCC
AGGATCTCTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCCAGGACGACCTGCCCGGCCTC
GCCGAGAAGGTGCTGCAGCGTCTTTCGCTTGCGCAGGGCCGCGTATTCCCGCCGACGCTGTCGGCCGACGCGCTCGACAC
GCTGCGTGCGTATGCCTTCCCGGGCAACGTGCGCGAACTGGAGAACATCCTCGAACGCGCGCTTGCATTGGCCGAAGGCG
ACAGCCTGACCGCCGAGGACCTGCGTCTGCCGAAGGCCGCGAACACGGTGCCCTCCGCGACGCCAGTCGCGGCTACGGGT
GGCACGTCGGCGACTGCGCCCGCGAATTCCGCAGCGCCGCCGCTGATGGTGCCGGGCCAGCCGGCGCAGGCGATCGATCC
GCGCACGCTCAACCCGCGCGATACGGCCAGCAGCCCCCTGCCCTCGTACATCGAGGAAATCGAACGCGCCGCGATCCAGC
AGGCGCTGCAGGAAAACCGCTACAACAAGACGCGCACCGCCGCGGCGCTCGGCATCACCTTCCGCGCGCTGCGCTACAAG
CTCAAGAAGCTCGGCATCGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-116)

• Bacterial regulatory protein, Fis family (HTH_8) (444-484)

• Sigma-54 interaction domain (Sigma54_activat) (140-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.884	99.384	0.585
pilR	Acinetobacter baumannii strain A118	47.035	100	0.472