Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACF0H7_RS03010 Genome accession   NZ_CP172305
Coordinates   615712..617052 (-) Length   446 a.a.
NCBI ID   WP_397451333.1    Uniprot ID   -
Organism   Pseudomonas sp. NA-150     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 610712..622052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0H7_RS02985 (ACF0H7_02985) - 611619..612191 (-) 573 WP_397451328.1 PilX N-terminal domain-containing pilus assembly protein -
  ACF0H7_RS02990 (ACF0H7_02990) - 612188..612997 (-) 810 WP_397451329.1 PilW family protein -
  ACF0H7_RS02995 (ACF0H7_02995) pilV 612994..613527 (-) 534 WP_397451330.1 type IV pilus modification protein PilV Machinery gene
  ACF0H7_RS03000 (ACF0H7_03000) - 613524..614078 (-) 555 WP_397451331.1 GspH/FimT family pseudopilin -
  ACF0H7_RS03005 (ACF0H7_03005) thiO 614323..615426 (+) 1104 WP_397451332.1 glycine oxidase ThiO -
  ACF0H7_RS03010 (ACF0H7_03010) pilR 615712..617052 (-) 1341 WP_397451333.1 sigma-54-dependent transcriptional regulator Regulator
  ACF0H7_RS03015 (ACF0H7_03015) pilS 617055..618644 (-) 1590 WP_397451334.1 sensor histidine kinase Regulator
  ACF0H7_RS03020 (ACF0H7_03020) - 618634..618873 (-) 240 WP_397451335.1 PP0621 family protein -
  ACF0H7_RS03025 (ACF0H7_03025) - 618992..620011 (-) 1020 WP_397451336.1 outer membrane protein assembly factor BamD -
  ACF0H7_RS03030 (ACF0H7_03030) rluD 620161..621123 (+) 963 WP_397451337.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACF0H7_RS03035 (ACF0H7_03035) pgeF 621132..621869 (+) 738 WP_397453812.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50054.21 Da        Isoelectric Point: 6.0481

>NTDB_id=1066128 ACF0H7_RS03010 WP_397451333.1 615712..617052(-) (pilR) [Pseudomonas sp. NA-150]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVKEARDWLAREPFDLCLTDMRLPDGNGLELVQHIQQRHPQVPVA
MITAFGSLDTAINALKAGAFDFLTKPVDLNRLRELVSSALRMHAAEGSENTIDKRLLGDSPPMRTLRKQISKLARSQAPI
YISGESGSGKELVARLIHEQGPRIDRPFVPVNCGAIPTELMESEFFGHRKGSFTGAVEDKPGLFQAANGGTLFLDEVADL
PLTMQVKLLRAIQEKAVRSIGGQQESVVDVRILCATHKDLSAEVAAGRFRQDLYYRLNVIELRVPSLRERREDILQLADN
VLRRLADGTGQPAARLDAQALDTLKSYRFPGNVRELENMLERAYTLCENDQIEAGDLRLADTPSTSDPGEPNLADIDNLE
DYLESIERKLILQALEETRWNRTAAAQRLSLTFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1066128 ACF0H7_RS03010 WP_397451333.1 615712..617052(-) (pilR) [Pseudomonas sp. NA-150]
ATGAGCCCACGGCAAAAAATCCTGATCGTCGATGATGAACCGGATATCCGCGAACTGCTTGAGATCACCCTAGGCCGGAT
GAAACTCGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGATTGGCTGGCGCGCGAACCCTTCGACCTGTGCCTTA
CCGACATGCGCCTGCCCGACGGTAATGGCCTGGAACTGGTGCAGCACATCCAGCAGCGTCATCCGCAGGTGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCCTCGATACCGCGATCAATGCGCTGAAAGCCGGCGCGTTCGACTTCCTGACCAAACCAGT
GGACCTCAATCGCTTGCGCGAACTGGTGTCCAGCGCCCTGCGCATGCACGCGGCGGAAGGCAGCGAAAACACCATCGACA
AACGCCTGCTCGGCGACTCGCCGCCGATGCGCACACTGCGTAAACAGATCAGCAAACTGGCACGCAGTCAGGCGCCGATC
TACATCAGTGGCGAATCGGGCAGTGGCAAGGAACTGGTCGCGCGCCTGATTCACGAACAAGGACCGCGCATCGACCGACC
GTTCGTCCCGGTCAACTGTGGTGCAATTCCTACCGAGCTGATGGAAAGTGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
CCGGCGCGGTCGAAGACAAGCCAGGATTATTCCAGGCGGCCAACGGCGGCACCTTGTTCCTCGATGAAGTCGCCGATTTG
CCGCTGACCATGCAAGTCAAACTGTTGCGCGCGATCCAGGAAAAGGCCGTGCGCAGCATTGGCGGGCAACAGGAATCCGT
GGTGGACGTGCGCATTCTCTGCGCCACCCACAAGGATTTGAGCGCGGAAGTGGCCGCCGGACGCTTCCGCCAGGATCTGT
ACTACCGCCTGAACGTCATTGAACTACGTGTGCCCTCCCTGCGCGAACGGCGGGAAGACATCCTGCAACTCGCCGACAAT
GTCCTGCGTCGCCTGGCCGACGGCACCGGCCAGCCTGCTGCCCGGCTCGACGCCCAGGCACTGGACACCCTGAAAAGCTA
CCGCTTTCCGGGTAACGTGCGCGAGCTGGAAAACATGCTCGAACGCGCCTACACCCTGTGCGAAAACGACCAGATCGAAG
CCGGCGACCTGCGCCTGGCCGACACCCCGAGCACCAGCGACCCCGGCGAACCGAACCTCGCGGACATCGACAACCTGGAA
GACTACCTGGAAAGCATCGAACGCAAACTGATCCTGCAGGCACTGGAAGAAACCCGCTGGAACCGTACGGCGGCGGCGCA
ACGACTGAGTCTGACGTTCAGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

82.844

99.327

0.823
  pilR Acinetobacter baumannii strain A118

49.02

100

0.504

Multiple sequence alignment