Detailed information NTG1066077

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACF8YQ_RS03315
• Genome accession: NZ_CP172297
• Coordinates: 728331..729719 (-)
• Length: 462 a.a.
• NCBI ID: WP_396622582.1
• Uniprot ID: -
• Organism: Marinobacter sp. W-8
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 723331..734719

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8YQ_RS03300	-	723522..727199 (+)	3678	WP_396623270.1	pilus assembly protein	-
ACF8YQ_RS03305	-	727213..727686 (+)	474	WP_396622580.1	type IV pilin protein	-
ACF8YQ_RS03310	-	727713..728273 (-)	561	WP_396622581.1	GspH/FimT family pseudopilin	-
ACF8YQ_RS03315	pilR	728331..729719 (-)	1389	WP_396622582.1	sigma-54-dependent transcriptional regulator	Regulator
ACF8YQ_RS03320	-	729769..731415 (-)	1647	WP_396622583.1	sensor histidine kinase	-
ACF8YQ_RS03325	-	731508..733172 (+)	1665	WP_396622584.1	NAD+ synthase	-
ACF8YQ_RS03330	-	733181..734014 (-)	834	WP_396622585.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 50588.73 Da
• Isoelectric Point: 4.8601

>NTDB_id=1066077 ACF8YQ_RS03315 WP_396622582.1 728331..729719(-) (pilR) [Marinobacter sp. W-8]
MTTQTALIVDDEPDIRDLLEITLTRMGITTYTAPDLASARELLQQHKPQLCLTDMNLPDGNGIELVHWIQQHTPCTPVAV
ITAYGSMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLSEPKARETADSDEPGLLLGDSPQIRKLRTQTKKLARSQA
PVFISGESGSGKELVARMIHLQGPRSDGPFVAVNCGAIPSELMESEFFGHKKGSFTGAVENKQGLFRSADGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGDFRQDLFYRINVIELAVPPLRERAEDISLLA
EHILQRIAREYECDPAKLTPAAIERLKGYEFPGNVRELENILERAFTLCDEDLIDAGDLHLGGGVAPAGSASATRETGSE
ADAGAAPVPEGEIDLEGYLESIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=1066077 ACF8YQ_RS03315 WP_396622582.1 728331..729719(-) (pilR) [Marinobacter sp. W-8]
ATGACTACACAGACAGCGCTGATTGTTGACGACGAGCCGGATATCCGGGATCTACTGGAAATCACCCTCACCCGGATGGG
CATTACCACCTACACCGCCCCCGATCTGGCCAGCGCCAGGGAACTTCTGCAACAGCACAAACCCCAGCTCTGCCTGACCG
ACATGAACCTGCCCGACGGCAATGGCATAGAGCTTGTACACTGGATTCAGCAACACACGCCCTGTACCCCCGTTGCCGTG
ATTACCGCCTATGGCAGCATGGACACAGCCATCGAGTCGCTCAAAGCCGGCGCCTTTGACTTCGTGTCCAAGCCCGTGGA
GCTGCCCCGGCTACGGGAACTCGTCAACAGCGCCCTGAAGCTATCCGAACCCAAAGCCCGCGAAACCGCCGATTCCGATG
AGCCCGGCCTGCTTCTGGGCGACTCGCCGCAAATCCGGAAACTGCGCACACAGACGAAAAAGCTCGCCCGAAGCCAGGCA
CCGGTGTTTATCAGTGGCGAGTCTGGCAGCGGAAAGGAGCTGGTTGCCCGCATGATTCATCTGCAAGGGCCCAGAAGTGA
CGGCCCCTTTGTCGCCGTGAACTGTGGCGCCATCCCCTCGGAGTTGATGGAAAGCGAGTTCTTCGGCCACAAAAAAGGCA
GTTTCACCGGCGCCGTCGAGAACAAACAGGGGCTGTTCCGCTCCGCCGATGGTGGCACCCTGTTTCTGGACGAAGTGGCC
GACCTCCCGCTGGCCATGCAGGTAAAACTGCTGCGTGCTATTCAGGAGAAAGCCGTTCGTCCGGTAGGCGACACCAAAGA
AGTGCCGGTGGACATCCGGGTGCTCAGCGCCACCCACAAAAACCTCCCGGAACTGGTGCAGGAAGGCGACTTCCGTCAGG
ATCTGTTTTACCGGATCAACGTTATCGAACTGGCTGTTCCGCCGCTGCGCGAGCGCGCCGAGGATATTTCCCTGCTGGCC
GAGCACATTCTTCAACGCATAGCCCGGGAATACGAGTGCGACCCGGCCAAACTCACCCCGGCCGCCATCGAACGACTTAA
AGGCTACGAGTTTCCCGGCAACGTGCGAGAACTGGAGAACATCCTGGAGCGCGCCTTTACCCTGTGCGACGAAGACCTGA
TTGATGCCGGAGATCTGCATCTTGGCGGCGGTGTTGCGCCAGCGGGCTCGGCCTCGGCGACCCGAGAGACGGGATCAGAA
GCGGATGCTGGCGCAGCCCCGGTGCCAGAGGGCGAGATTGATCTCGAAGGTTATCTGGAAAGCATCGAGCGACAGGCCAT
TGAAAAAGCGCTGGAAGCTACGCGGTGGAATAAAACGGCGGCGGCCAAGAGGCTGGGAATCAGCTTTCGGGCATTGCGGT
ATCGGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	65.152	100	0.652
pilR	Acinetobacter baumannii strain A118	54.113	100	0.541
luxO	Vibrio cholerae strain A1552	37.004	98.268	0.364