Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACH105_RS03345 Genome accession   NZ_CP172234
Coordinates   719026..720666 (-) Length   546 a.a.
NCBI ID   WP_313280618.1    Uniprot ID   -
Organism   Stutzerimonas balearica strain Y11     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 714026..725666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH105_RS03330 (ACH105_03330) - 714697..716292 (-) 1596 WP_312358354.1 diguanylate cyclase -
  ACH105_RS03335 (ACH105_03335) - 716485..717537 (+) 1053 WP_041107889.1 DUF2333 family protein -
  ACH105_RS03340 (ACH105_03340) pilR 717582..718919 (-) 1338 WP_395764396.1 sigma-54-dependent transcriptional regulator Regulator
  ACH105_RS03345 (ACH105_03345) pilS 719026..720666 (-) 1641 WP_313280618.1 ATP-binding protein Regulator
  ACH105_RS03350 (ACH105_03350) - 720608..720841 (-) 234 WP_061340058.1 PP0621 family protein -
  ACH105_RS03355 (ACH105_03355) - 720922..721914 (-) 993 WP_041107883.1 outer membrane protein assembly factor BamD -
  ACH105_RS03360 (ACH105_03360) rluD 722062..723036 (+) 975 WP_041107881.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACH105_RS03365 (ACH105_03365) pgeF 723033..723764 (+) 732 WP_395764397.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 546 a.a.        Molecular weight: 60050.13 Da        Isoelectric Point: 7.2785

>NTDB_id=1065770 ACH105_RS03345 WP_313280618.1 719026..720666(-) (pilS) [Stutzerimonas balearica strain Y11]
MPGTAARRIWSEAGNPVDTDTLAIAAGQSQRILRLYHLYRLAIGLALVLLISSDLHNDLLQMSNPQLFSYGAWLYLIVNI
VVAVLLQNPTQTVQVLALALVDVMLLAALFYFAGGTPSGIGNLLIIAVAISNILVRGKVGFLIAAVAATGLIYLTFYLSL
SHPAANSQFVQAGALGTLCFAAAFLVQGLTRRLQASEDLARQRAADVANLEALNTLILQRMRTGILVLDPQQRVLLANQG
ALQMLEQDSLTGTKLAEHCPDLIARLGQWQNNPTLRAQGLQISSGGPMLQPSFASLQHGERCNTLVFLEDISQIAQQAQQ
LKLASLGRLTASIAHEIRNPLGAISHAAQLLQESEQLDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKY
WLHRFVSEFRSGLSPRQCLHLETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQVHDTAQVWLRLYRDESSDLPMAEVLD
DGPGVAPEQLSNIFEPFYTTESKGTGLGLYISRELCESNQARLDYQPRPEGGSCFRIVFAHPRKLG

Nucleotide


Download         Length: 1641 bp        

>NTDB_id=1065770 ACH105_RS03345 WP_313280618.1 719026..720666(-) (pilS) [Stutzerimonas balearica strain Y11]
ATGCCTGGTACTGCAGCCAGGCGCATCTGGAGCGAGGCCGGCAACCCGGTGGACACTGACACCCTGGCCATCGCCGCTGG
CCAGAGCCAGCGCATCCTGCGTCTCTACCACCTCTACCGCCTCGCCATCGGACTGGCGCTGGTGCTGCTGATCAGCAGCG
ACCTGCACAACGACCTGCTGCAGATGAGCAACCCGCAGCTGTTCAGCTACGGCGCCTGGCTCTACCTGATCGTCAACATC
GTTGTCGCGGTACTGCTGCAGAACCCCACACAGACGGTACAGGTCCTGGCGCTGGCCCTGGTCGACGTGATGCTACTGGC
CGCCCTGTTCTATTTTGCTGGCGGCACGCCCAGCGGGATCGGCAACCTGCTGATCATCGCGGTGGCCATCTCGAACATCC
TGGTACGCGGCAAGGTCGGCTTTCTGATCGCCGCGGTCGCGGCTACCGGCCTGATCTACCTGACCTTTTACCTGAGCCTC
AGCCACCCGGCCGCCAACAGCCAGTTCGTCCAGGCGGGCGCACTGGGCACGCTGTGCTTCGCCGCCGCTTTTCTGGTCCA
GGGCCTGACGCGTCGCCTGCAAGCCAGTGAAGACCTGGCCCGTCAGCGCGCCGCGGACGTCGCGAACCTCGAGGCGCTGA
ACACGCTCATCCTGCAACGCATGCGCACCGGCATTCTCGTGCTCGACCCGCAGCAGCGCGTACTGCTGGCCAATCAGGGT
GCACTGCAGATGCTCGAACAGGACAGCCTCACCGGCACGAAGCTGGCCGAGCATTGCCCGGACCTGATCGCGCGCCTGGG
CCAATGGCAGAACAACCCGACCTTACGCGCCCAGGGACTGCAGATTTCCAGCGGCGGGCCGATGCTGCAGCCAAGCTTTG
CCTCGCTGCAGCATGGCGAGCGATGCAACACGCTGGTGTTTCTCGAAGACATCTCGCAGATCGCCCAGCAGGCCCAGCAG
CTCAAGCTGGCTTCGCTCGGCCGGCTGACCGCCAGCATCGCCCATGAGATCCGCAACCCCCTTGGTGCGATCAGCCATGC
CGCCCAGCTGCTGCAGGAATCCGAGCAGCTCGACGGCCCGGATCGACGGCTGGCACAGATCATCCAGGATCATTCGAGAC
GCATGAATCTGGTGATCGAAAACGTCCTGCAGCTGTCGCGCCGACGGCAGGCGGAACCGCAGCTGCTGGACCTGAAGTAC
TGGCTGCATCGCTTCGTCAGCGAGTTCCGCAGCGGCCTTTCGCCGCGCCAGTGCCTGCATCTGGAAACCATCGGCAGCTC
GCTGCAGACCCGCATGGACCCCAATCAGCTGACGCAGGTGCTGACCAACCTGGTGCAGAACGGCCTGCGCTATAGCGGGC
AGGTGCACGACACAGCCCAGGTATGGCTGCGCCTGTACCGCGACGAGTCCAGCGACCTGCCGATGGCCGAAGTGCTCGAC
GATGGTCCCGGCGTGGCACCGGAACAGCTGAGCAACATCTTCGAGCCCTTCTATACCACCGAGAGCAAAGGCACCGGGCT
GGGCTTGTACATTTCGCGGGAGCTGTGCGAGAGCAATCAGGCGCGCCTGGACTATCAGCCCCGTCCGGAAGGTGGCAGCT
GCTTCCGCATTGTCTTCGCCCATCCGCGCAAGCTGGGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(325-389)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(433-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.259

96.337

0.619

Multiple sequence alignment