Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACH105_RS03340 Genome accession   NZ_CP172234
Coordinates   717582..718919 (-) Length   445 a.a.
NCBI ID   WP_395764396.1    Uniprot ID   -
Organism   Stutzerimonas balearica strain Y11     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 712582..723919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH105_RS03325 (ACH105_03325) - 712611..714575 (-) 1965 WP_395764395.1 methyl-accepting chemotaxis protein -
  ACH105_RS03330 (ACH105_03330) - 714697..716292 (-) 1596 WP_312358354.1 diguanylate cyclase -
  ACH105_RS03335 (ACH105_03335) - 716485..717537 (+) 1053 WP_041107889.1 DUF2333 family protein -
  ACH105_RS03340 (ACH105_03340) pilR 717582..718919 (-) 1338 WP_395764396.1 sigma-54-dependent transcriptional regulator Regulator
  ACH105_RS03345 (ACH105_03345) pilS 719026..720666 (-) 1641 WP_313280618.1 ATP-binding protein Regulator
  ACH105_RS03350 (ACH105_03350) - 720608..720841 (-) 234 WP_061340058.1 PP0621 family protein -
  ACH105_RS03355 (ACH105_03355) - 720922..721914 (-) 993 WP_041107883.1 outer membrane protein assembly factor BamD -
  ACH105_RS03360 (ACH105_03360) rluD 722062..723036 (+) 975 WP_041107881.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACH105_RS03365 (ACH105_03365) pgeF 723033..723764 (+) 732 WP_395764397.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49538.03 Da        Isoelectric Point: 6.6173

>NTDB_id=1065769 ACH105_RS03340 WP_395764396.1 717582..718919(-) (pilR) [Stutzerimonas balearica strain Y11]
MSARQKALIIDDEPDIRELLEITLGRMKLDTRSARSVKEARECLSREHYDLCLTDMRLPDGSGLELVQHIQQQYPHLPVA
MITAYGSLDTAISALKAGAFDFVTKPVDLNRLRGLVSTALRLRPSTPEVPSDSRLLGNSPPMKTLRKQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGARAERPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRVVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIGLLADVM
LKRLAAECGEPPARLTADALAKLESYRFPGNVRELENMLERAYTLCEDDQIKAGDLRLAEAVPAADGQENNLAQIDNLED
HLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1065769 ACH105_RS03340 WP_395764396.1 717582..718919(-) (pilR) [Stutzerimonas balearica strain Y11]
ATGAGCGCCCGCCAGAAAGCCCTGATCATCGATGACGAACCCGATATCCGCGAACTGCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACGCGCAGCGCCCGCAGCGTCAAGGAGGCGCGCGAGTGCCTCAGCCGCGAGCATTACGACCTGTGCCTGA
CCGATATGCGCCTGCCCGACGGCTCCGGCCTGGAACTGGTACAGCACATACAGCAGCAGTATCCGCATCTGCCGGTCGCG
ATGATCACCGCCTACGGCAGCCTCGATACGGCAATCAGCGCACTGAAAGCGGGCGCTTTCGACTTCGTCACCAAACCGGT
GGATCTCAACCGTCTGCGCGGGCTCGTCAGCACGGCACTGCGCCTGCGCCCAAGCACCCCGGAAGTACCCAGCGACAGTC
GCCTGCTGGGCAACTCGCCGCCGATGAAGACGCTGCGCAAGCAGATCGGCAAGCTCGCCCGCAGTCAGGCTCCGGTGTAT
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAGTTGGTTGCGCGCCTGATCCACGAGCAGGGCGCACGCGCAGAGCGGCCTTT
CGTCCCGGTCAACTGCGGTGCGATTCCATCGGAGCTGATGGAGAGCGAGTTCTTCGGACACAAGAAAGGCAGCTTCAGCG
GCGCGATCGAGGACAAGCCGGGGCTGTTCCAGGCCGCCAATGGCGGCACGCTGTTCCTCGACGAGGTCGCCGACCTGCCT
TTACCCATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAAGCCGTGCGCGTGGTTGGCGGCGCTCAGGAGGTCATGGT
CGATGTGCGCATCCTCTGCGCCACGCACAAGGATCTCGCCAGCGAAGTGGCGGCCGGGCGTTTCCGCCAGGACCTCTATT
ACCGCCTGAACGTCATTGAACTGCGCGTGCCGCCGCTGCGCGAGCGTCGCGAAGACATCGGTTTGCTGGCCGACGTGATG
CTCAAGCGCCTGGCGGCCGAGTGCGGCGAGCCGCCGGCGCGGCTGACAGCCGATGCGCTGGCCAAGCTGGAGAGCTATCG
CTTCCCCGGCAACGTCCGCGAACTGGAAAACATGCTCGAGCGCGCCTACACGCTTTGCGAAGACGACCAGATCAAGGCCG
GCGACCTGCGTCTGGCCGAGGCCGTGCCGGCAGCCGACGGCCAGGAGAACAACCTGGCGCAGATCGACAACCTGGAAGAC
CATCTGGAAGAGATCGAACGCAAGCTGATCATGCAGGCGCTGGAGGAGACGCGCTGGAACCGCACCGCCGCAGCACAGCG
CCTGGGGCTGACTTTCCGCTCGATGCGCTACCGGCTGAAAAAGCTCGGCCTAGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

83.559

99.775

0.834
  pilR Acinetobacter baumannii strain A118

50.98

100

0.526

Multiple sequence alignment